Ammospiza nelsoni
Nelson's sparrow
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bAmmNel1: GCA_027579445.1 | bAmmNel1: GCA_027579665.1 |
ENA | bAmmNel1: GCA_027579445.1 | bAmmNel1: GCA_027579665.1 |
UCSC Genome Browser | bAmmNel1: GCA_027579445.1 | bAmmNel1: GCA_027579665.1 |
metadata.yaml (view) (edit on github) |
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CC0 Chrissy McClarren and Andy Reago (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.30 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.30 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.30 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.30 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 29 April 2022
bAmmNel1.pri.cur.20220429.fasta.gz (324.5 MiB)
Quality: 0.5 errors/Mb (QV=63.04)
Version assembly_curated from 29 April 2022
bAmmNel1.pri.cur.20220429.fasta.gz (324.5 MiB)
Quality: 0.5 errors/Mb (QV=63.04)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 37.43 Mbp | 0 | 155.45 Mbp |
20 | 7 | 23.62 Mbp | 1 | 120.72 Mbp |
30 | 13 | 20.19 Mbp | 2 | 115.51 Mbp |
40 | 20 | 15.04 Mbp | 4 | 76.63 Mbp |
50 | 31 | 10.16 Mbp | 6 | 65.40 Mbp |
60 | 47 | 6.61 Mbp | 9 | 36.57 Mbp |
70 | 71 | 4.14 Mbp | 14 | 21.55 Mbp |
80 | 115 | 2.05 Mbp | 21 | 12.24 Mbp |
90 | 240 | 363.10 Kbp | 49 | 1.04 Mbp |
100 | 0 | 0 | ||
0.908x | 292 | 1.18 Gbp | 77 | 1.19 Gbp |
NG based on genome size 1.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 December 2022
bAmmNel1.alt.cur.20221222.fasta.gz (259.0 MiB)
Quality: not computed
Version assembly_curated from 22 December 2022
bAmmNel1.alt.cur.20221222.fasta.gz (259.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 40 | 2.25 Mbp | 40 | 2.25 Mbp |
20 | 116 | 1.46 Mbp | 116 | 1.46 Mbp |
30 | 221 | 1.05 Mbp | 221 | 1.05 Mbp |
40 | 363 | 0.79 Mbp | 363 | 0.79 Mbp |
50 | 553 | 0.58 Mbp | 553 | 0.58 Mbp |
60 | 824 | 396.29 Kbp | 824 | 396.29 Kbp |
70 | 1261 | 213.51 Kbp | 1261 | 213.51 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.795x | 2834 | 1.03 Gbp | 2834 | 1.03 Gbp |
NG based on genome size 1.30 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.