Anabas testudineus

climbing perch

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAnaTes1: GCA_900324465.3 fAnaTes1: GCA_900650485.1
ENA fAnaTes1: GCA_900324465.3 fAnaTes1: GCA_900650485.1
UCSC Genome Browser fAnaTes1: GCA_900324465.3 fAnaTes1: GCA_900650485.1

metadata.yaml (view) (edit on github)
species:
  short_name: fAnaTes
  name: Anabas testudineus
  taxon_id: 64144
  common_name: climbing perch
  order:
    name: Anabantiformes
  family:
    name: Anabantidae
  individuals:
    - short_name: fAnaTes1
  genome_size: 662696525
  genome_size_method:
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fAnaTes1 38.94 Gbp 58.76x 69.8 GiB
10x fAnaTes1 120.49 Gbp 181.81x 78.0 GiB
Bionano fAnaTes1 N/A 3640.00x 3.2 GiB
Arima fAnaTes1 98.84 Gbp 149.14x 50.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.66 Gbp.
Last upload on 9 March 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAnaTes1 PacBio CLR 38.94 Gbp 58.76x 69.8 GiB
10x 120.49 Gbp 181.81x 78.0 GiB
Bionano N/A 3640.00x 3.2 GiB
Arima 98.84 Gbp 149.14x 50.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.66 Gbp.
Last upload on 9 March 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 December 2018
fAnaTes1.pri.cur.20181211.fasta.gz (149.0 MiB)

Quality: 194.2 errors/Mb (QV=37.12)

Contigs Scaffolds
NG LG Len LG Len
10 4 13.92 Mbp 2 28.52 Mbp
20 9 12.15 Mbp 4 27.36 Mbp
30 15 9.90 Mbp 6 26.09 Mbp
40 22 7.97 Mbp 9 25.06 Mbp
50 33 4.57 Mbp 12 23.46 Mbp
60 51 2.85 Mbp 15 21.92 Mbp
70 85 1.50 Mbp 18 19.93 Mbp
80 169 366.87 Kbp 21 18.69 Mbp
90 0 0
100 0 0
0.833x 316 0.55 Gbp 50 0.56 Gbp
NG based on genome size 0.66 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
fAnaTes1.alt.cur.20181211.fasta.gz (156.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 3.23 Mbp 14 3.31 Mbp
20 39 2.24 Mbp 37 2.38 Mbp
30 76 1.53 Mbp 72 1.60 Mbp
40 127 1.07 Mbp 121 1.14 Mbp
50 202 0.71 Mbp 192 0.75 Mbp
60 322 430.84 Kbp 305 456.80 Kbp
70 557 166.45 Kbp 520 183.53 Kbp
80 2079 16.43 Kbp 1922 18.26 Kbp
90 0 0
100 0 0
0.810x 2677 0.54 Gbp 2641 0.54 Gbp
NG based on genome size 0.66 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
fAnaTes1.MT.20191001.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.