Anser brachyrhynchus

Pink-footed goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnsBra
  name: Anser brachyrhynchus
  taxon_id: 132585
  common_name: Pink-footed goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnsBra1
      biosample_id: SAMEA112468040
      sex: female
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnsBra1 48.27 Gbp 35.00x 28.8 GiB
Arima bAnsBra1 99.34 Gbp 72.04x 30.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnsBra1 PacBio HiFi (.bam) 48.27 Gbp 35.00x 28.8 GiB
Arima 99.34 Gbp 72.04x 30.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 29 May 2024
bAnsBra1.pri.cur.20240529.fasta.gz (350.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 5.87 Mbp 1 213.09 Mbp
20 47 4.16 Mbp 2 161.66 Mbp
30 85 3.17 Mbp 3 126.59 Mbp
40 136 2.38 Mbp 4 80.17 Mbp
50 201 1.85 Mbp 6 66.56 Mbp
60 290 1.31 Mbp 9 32.90 Mbp
70 417 0.88 Mbp 14 22.68 Mbp
80 622 0.50 Mbp 22 12.58 Mbp
90 1088 151.00 Kbp 134 296.56 Kbp
100 0 0
0.933x 1852 1.29 Gbp 715 1.29 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 29 May 2024
bAnsBra1.alt.cur.20240529.fasta.gz (314.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 46 2.14 Mbp 46 2.14 Mbp
20 125 1.46 Mbp 125 1.46 Mbp
30 235 1.11 Mbp 235 1.11 Mbp
40 380 0.81 Mbp 380 0.81 Mbp
50 581 0.57 Mbp 581 0.57 Mbp
60 880 375.07 Kbp 880 375.07 Kbp
70 1398 190.00 Kbp 1398 190.00 Kbp
80 3129 32.68 Kbp 3129 32.68 Kbp
90 0 0
100 0 0
0.832x 5114 1.15 Gbp 5114 1.15 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bAnsBra1.MT.20231107.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.