Aquila chrysaetos

European golden eagle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bAquChr1: GCA_900496995.4 bAquChr1: GCA_902153765.2
ENA bAquChr1: GCA_900496995.4 bAquChr1: GCA_902153765.2
UCSC Genome Browser bAquChr1: GCA_900496995.4 bAquChr1: GCA_902153765.2

metadata.yaml (view) (edit on github)
species:
  short_name: bAquChr
  name: Aquila chrysaetos
  taxon_id: 223781
  common_name: European golden eagle
  order:
    name: Falconiformes
  family:
    name: Accipitridae
  individuals:
    - short_name: bAquChr1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0 Diego Delso (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bAquChr1 74.01 Gbp 61.50x 131.0 GiB
10x bAquChr1 130.41 Gbp 108.36x 80.2 GiB
Bionano bAquChr1 N/A 319.88x 508.5 MiB
Dovetail Genomics bAquChr1 120.80 Gbp 100.38x 78.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 5 April 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAquChr1 PacBio CLR 74.01 Gbp 61.50x 131.0 GiB
10x 130.41 Gbp 108.36x 80.2 GiB
Bionano N/A 319.88x 508.5 MiB
Dovetail Genomics 120.80 Gbp 100.38x 78.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 5 April 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 July 2019
bAquChr1.pri.cur.20190702.fasta.gz (352.1 MiB)

Quality: 46.0 errors/Mb (QV=43.37)

Contigs Scaffolds
NG LG Len LG Len
10 1 44.70 Mbp 1 85.46 Mbp
20 4 39.34 Mbp 2 83.00 Mbp
30 8 28.56 Mbp 4 77.27 Mbp
40 12 25.77 Mbp 5 76.62 Mbp
50 18 21.92 Mbp 8 46.93 Mbp
60 23 19.66 Mbp 10 43.95 Mbp
70 30 14.80 Mbp 13 41.79 Mbp
80 40 10.43 Mbp 17 29.70 Mbp
90 54 6.76 Mbp 21 24.76 Mbp
100 332 60 bp 141 60 bp
1.000x 333 1.20 Gbp 142 1.20 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 July 2019
bAquChr1.alt.cur.20190702.fasta.gz (241.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 37 1.77 Mbp 27 1.89 Mbp
20 90 1.35 Mbp 76 1.45 Mbp
30 160 1.04 Mbp 143 1.08 Mbp
40 251 0.81 Mbp 231 0.84 Mbp
50 363 0.64 Mbp 340 0.66 Mbp
60 511 485.40 Kbp 485 493.71 Kbp
70 708 361.17 Kbp 679 364.88 Kbp
80 997 220.16 Kbp 965 222.00 Kbp
90 1615 76.63 Kbp 1577 76.83 Kbp
100 3898 974 bp 3859 974 bp
1.000x 3899 0.82 Gbp 3860 0.82 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
bAquChr1.MT.20191001.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.