Ara ararauna

blue-and-yellow macaw

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bAraAra1: GCA_028858555.1 bAraAra1: GCA_028858755.1
ENA bAraAra1: GCA_028858555.1 bAraAra1: GCA_028858755.1
UCSC Genome Browser bAraAra1: GCA_028858555.1 bAraAra1: GCA_028858755.1

metadata.yaml (view) (edit on github)
species:
  name: Ara ararauna
  individuals:
  - short_name: bAraAra1
  short_name: bAraAra
  taxon_id: 9226
  common_name: blue-and-yellow macaw
  genome_size: 1412000000
  genome_size_method: GoAT
  order:
    name: Psittaciformes
  family:
    name: Psittacidae
  project: [ vgp ]
CC0 Bernard Spragg (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bAraAra1 142.04 Gbp 100.59x 433.6 GiB
PacBio HiFi (.fq) bAraAra1 54.99 Gbp 38.95x 41.2 GiB
PacBio HiFi (.bam) bAraAra1 19.84 Gbp 14.05x 67.6 GiB
Bionano bAraAra1 N/A 244.45x 610.3 MiB
Arima bAraAra1 64.99 Gbp 46.03x 33.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 12 January 2026.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAraAra1 PacBio HiFi (subreads) 142.04 Gbp 100.59x 433.6 GiB
PacBio HiFi (.fq) 54.99 Gbp 38.95x 41.2 GiB
PacBio HiFi (.bam) 19.84 Gbp 14.05x 67.6 GiB
Bionano N/A 244.45x 610.3 MiB
Arima 64.99 Gbp 46.03x 33.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 12 January 2026.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 18 January 2023
bAraAra1.hap1.cur.20230118.fasta.gz (346.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 72.32 Mbp 0 169.34 Mbp
20 3 68.24 Mbp 1 164.30 Mbp
30 5 61.80 Mbp 2 134.34 Mbp
40 8 42.47 Mbp 3 126.90 Mbp
50 12 31.40 Mbp 5 93.60 Mbp
60 17 21.31 Mbp 6 91.21 Mbp
70 26 13.17 Mbp 8 44.21 Mbp
80 42 4.59 Mbp 15 10.79 Mbp
90 0 0
100 0 0
0.866x 353 1.22 Gbp 246 1.22 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 18 January 2023
bAraAra1.hap2.cur.20230118.fasta.gz (356.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 86.88 Mbp 0 169.78 Mbp
20 3 83.00 Mbp 1 164.48 Mbp
30 5 64.21 Mbp 2 134.14 Mbp
40 8 34.92 Mbp 3 127.37 Mbp
50 13 21.93 Mbp 5 95.51 Mbp
60 21 14.65 Mbp 6 89.27 Mbp
70 32 10.43 Mbp 8 44.71 Mbp
80 49 5.16 Mbp 15 13.85 Mbp
90 132 0.59 Mbp 66 0.81 Mbp
100 0 0
0.921x 404 1.30 Gbp 274 1.30 Gbp
NG based on genome size 1.41 Gbp.
Assembly Metadata
assembly_vgp_HiC_2.0/bAraAra1.yaml (view)
species: Ara ararauna
specimen: bAraAra1
projects:
  - vgp
hap1: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/bAraAra1.HiC.hap1.20220601.fasta.gz
hap2: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/bAraAra1.HiC.hap2.20220601.fasta.gz
hap1_hic_bam: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/bAraAra1_hap1__s2.bam
hap2_hic_bam: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/bAraAra1_hap2__s2.bam
hap1_pretext: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/bAraAra1_hap1__s2_heatmap.pretext
hap2_pretext: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/bAraAra1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Ara_ararauna/bAraAra1/assembly_vgp_HiC_2.0/evaluation/merqury/bAraAra1_png/
pipeline:
  - hifiasm (0.16.1+galaxy2)
  - solve (3.7)
  - salsa (2.3+galaxy2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.