Ascaphus truei
tailed frog
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY-NC 2.0 Ken-ichi Ueda (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 4.04 Gbp.
Last upload on 12 August 2024.
Coverage based on genome size 4.04 Gbp.
Last upload on 12 August 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 4.04 Gbp.
Last upload on 12 August 2024.
Coverage based on genome size 4.04 Gbp.
Last upload on 12 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 29 April 2024
aAscTru1.hap1.cur.20240429.fasta.gz (0.9 GiB)
Quality: not computed
Version assembly_curated from 29 April 2024
aAscTru1.hap1.cur.20240429.fasta.gz (0.9 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 100 | 3.02 Mbp | 1 | 0.56 Gbp |
20 | 259 | 2.16 Mbp | 2 | 491.29 Mbp |
30 | 479 | 1.56 Mbp | 3 | 439.62 Mbp |
40 | 779 | 1.17 Mbp | 4 | 424.00 Mbp |
50 | 1178 | 0.87 Mbp | 5 | 310.04 Mbp |
60 | 1726 | 0.63 Mbp | 7 | 117.24 Mbp |
70 | 2513 | 412.32 Kbp | 12 | 58.93 Mbp |
80 | 3836 | 223.24 Kbp | 21 | 33.18 Mbp |
90 | 7159 | 57.49 Kbp | 1390 | 81.09 Kbp |
100 | 0 | 0 | ||
0.921x | 9569 | 3.72 Gbp | 3549 | 3.72 Gbp |
NG based on genome size 4.04 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 29 April 2024
aAscTru1.hap2.cur.20240429.fasta.gz (0.9 GiB)
Quality: not computed
Version assembly_curated from 29 April 2024
aAscTru1.hap2.cur.20240429.fasta.gz (0.9 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 105 | 2.91 Mbp | 1 | 0.53 Gbp |
20 | 276 | 2.01 Mbp | 2 | 0.51 Gbp |
30 | 509 | 1.50 Mbp | 3 | 458.98 Mbp |
40 | 816 | 1.13 Mbp | 4 | 396.16 Mbp |
50 | 1230 | 0.85 Mbp | 5 | 311.34 Mbp |
60 | 1796 | 0.60 Mbp | 7 | 118.04 Mbp |
70 | 2635 | 385.09 Kbp | 13 | 58.67 Mbp |
80 | 4074 | 200.58 Kbp | 21 | 33.73 Mbp |
90 | 8060 | 38.84 Kbp | 2067 | 46.35 Kbp |
100 | 0 | 0 | ||
0.905x | 8802 | 3.66 Gbp | 2779 | 3.66 Gbp |
NG based on genome size 4.04 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.