Astatotilapia calliptera

Eastern happy

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAstCal1: GCA_900246225.5
ENA fAstCal1: GCA_900246225.5
UCSC Genome Browser fAstCal1: GCA_900246225.5

metadata.yaml (view) (edit on github)
species:
  short_name: fAstCal
  name: Astatotilapia calliptera
  taxon_id: 8154
  common_name: Eastern happy
  order:
    name: Cichliformes
  family:
    name: Cichlidae
  individuals:
    - short_name: fAstCal1
  genome_size: 972478608
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0 Alexandra Tyers (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fAstCal1 74.89 Gbp 77.01x 269.6 GiB
10x fAstCal1 118.06 Gbp 121.40x 78.9 GiB
Bionano fAstCal1 N/A 109.85x 129.7 MiB
Bases and Coverage are approximate.
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAstCal1 PacBio CLR 74.89 Gbp 77.01x 269.6 GiB
10x 118.06 Gbp 121.40x 78.9 GiB
Bionano N/A 109.85x 129.7 MiB
Bases and Coverage are approximate.
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267.4 MiB)

Quality: 180.1 errors/Mb (QV=37.45)

Contigs Scaffolds
NG LG Len LG Len
10 6 11.57 Mbp 1 52.51 Mbp
20 15 9.12 Mbp 3 41.43 Mbp
30 28 6.68 Mbp 6 39.99 Mbp
40 46 5.08 Mbp 8 38.68 Mbp
50 68 3.98 Mbp 11 36.68 Mbp
60 99 2.48 Mbp 13 35.85 Mbp
70 145 1.69 Mbp 16 34.07 Mbp
80 219 0.88 Mbp 19 31.47 Mbp
90 625 49.41 Kbp 122 64.48 Kbp
100 0 0
0.904x 738 0.88 Gbp 248 0.88 Gbp
NG based on genome size 0.97 Gbp.
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.0 from 17 August 2018
fAstCal1.alt.asm.20180817.fasta.gz (141.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 263 225.89 Kbp 263 225.89 Kbp
20 896 110.49 Kbp 896 110.49 Kbp
30 2146 57.56 Kbp 2146 57.56 Kbp
40 4480 31.24 Kbp 4480 31.24 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.481x 8123 467.67 Mbp 8123 467.67 Mbp
NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fAstCal1.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.