Asterias rubens
common starfish
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | eAstRub1: GCA_902459465.3 | eAstRub1: GCA_902459445.1 |
ENA | eAstRub1: GCA_902459465.3 | eAstRub1: GCA_902459445.1 |
UCSC Genome Browser | eAstRub1: GCA_902459465.3 | eAstRub1: GCA_902459445.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 4.0, Hans Hillewaert (wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio CLR | eAstRub1 | 47.02 Gbp | 112.59x | 83.9 GiB | |
Dovetail Genomics | eAstRub1 | 121.28 Gbp | 290.42x | 77.7 GiB | |
Illumina | eAstRub1 | 119.26 Gbp | 285.57x | 78.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
eAstRub1 | PacBio CLR | 47.02 Gbp | 112.59x | 83.9 GiB | |
Dovetail Genomics | 121.28 Gbp | 290.42x | 77.7 GiB | ||
Illumina | 119.26 Gbp | 285.57x | 78.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 August 2019
eAstRub1.pri.cur.20190809.fasta.gz (119.3 MiB)
Quality: 35.1 errors/Mb (QV=44.54)
Version assembly_curated from 9 August 2019
eAstRub1.pri.cur.20190809.fasta.gz (119.3 MiB)
Quality: 35.1 errors/Mb (QV=44.54)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 10 | 2.88 Mbp | 1 | 25.66 Mbp |
20 | 26 | 2.43 Mbp | 3 | 22.72 Mbp |
30 | 45 | 2.02 Mbp | 4 | 22.60 Mbp |
40 | 67 | 1.76 Mbp | 6 | 21.89 Mbp |
50 | 93 | 1.38 Mbp | 8 | 20.56 Mbp |
60 | 126 | 1.11 Mbp | 10 | 18.07 Mbp |
70 | 168 | 0.88 Mbp | 13 | 14.67 Mbp |
80 | 224 | 0.63 Mbp | 16 | 13.49 Mbp |
90 | 306 | 390.85 Kbp | 19 | 12.66 Mbp |
100 | 620 | 6.70 Kbp | 149 | 13.68 Kbp |
1.000x | 621 | 417.45 Mbp | 150 | 417.60 Mbp |
NG based on genome size 417.60 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 August 2019
eAstRub1.alt.cur.20190809.fasta.gz (112.3 MiB)
Quality: not computed
Version assembly_curated from 9 August 2019
eAstRub1.alt.cur.20190809.fasta.gz (112.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 69 | 417.50 Kbp | 69 | 417.50 Kbp |
20 | 177 | 317.25 Kbp | 177 | 317.25 Kbp |
30 | 316 | 250.09 Kbp | 316 | 250.09 Kbp |
40 | 492 | 201.45 Kbp | 492 | 201.45 Kbp |
50 | 709 | 161.27 Kbp | 709 | 161.27 Kbp |
60 | 984 | 125.50 Kbp | 984 | 125.50 Kbp |
70 | 1340 | 95.76 Kbp | 1340 | 95.76 Kbp |
80 | 1811 | 70.84 Kbp | 1811 | 70.84 Kbp |
90 | 2485 | 46.60 Kbp | 2485 | 46.60 Kbp |
100 | 3969 | 135 bp | 3968 | 135 bp |
1.000x | 3970 | 390.77 Mbp | 3969 | 390.77 Mbp |
NG based on genome size 417.60 Mbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 December 2019
eAstRub1.MT.20191207.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 7 December 2019
eAstRub1.MT.20191207.fasta.gz (4.9 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.