Aythya ferina

common pochard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAytFer
  name: Aythya ferina
  taxon_id: 219593
  common_name: common pochard
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAytFer1
      biosample_id: SAMEA112468034
      sex: female
  genome_size: 1349640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAytFer1 137.31 Gbp 101.74x 63.8 GiB
Arima bAytFer1 129.25 Gbp 95.77x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAytFer1 PacBio HiFi (.bam) 137.31 Gbp 101.74x 63.8 GiB
Arima 129.25 Gbp 95.77x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 27 July 2024
bAytFer1.hap1.cur.20240727.fasta.gz (349.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.58 Mbp 1 207.52 Mbp
20 29 6.99 Mbp 2 161.71 Mbp
30 50 6.16 Mbp 3 120.40 Mbp
40 75 4.69 Mbp 4 85.92 Mbp
50 106 3.88 Mbp 6 65.54 Mbp
60 146 2.95 Mbp 9 33.73 Mbp
70 203 1.87 Mbp 14 21.48 Mbp
80 300 1.05 Mbp 22 12.10 Mbp
90 572 151.24 Kbp 145 220.06 Kbp
100 0 0
0.928x 1336 1.25 Gbp 862 1.25 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 27 July 2024
bAytFer1.hap2.cur.20240727.fasta.gz (312.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.88 Mbp 1 207.39 Mbp
20 29 7.07 Mbp 2 161.47 Mbp
30 51 5.32 Mbp 3 121.05 Mbp
40 79 4.46 Mbp 4 77.42 Mbp
50 114 3.36 Mbp 7 38.01 Mbp
60 162 2.28 Mbp 11 22.70 Mbp
70 239 1.34 Mbp 18 14.65 Mbp
80 428 222.91 Kbp 72 463.76 Kbp
90 0 0
100 0 0
0.818x 767 1.10 Gbp 362 1.10 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bAytFer1.MT.20240227.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.