Barbatula barbatula
stone loach
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fBarBar1: GCA_947034865.1 | fBarBar1: GCA_947034905.1 |
ENA | fBarBar1: GCA_947034865.1 | fBarBar1: GCA_947034905.1 |
UCSC Genome Browser | fBarBar1: GCA_947034865.1 | fBarBar1: GCA_947034905.1 |
metadata.yaml (view) (edit on github) |
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CC BY 3.0 Michal Maňas (Wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fBarBar1 | 18.84 Gbp | 35.67x | 11.3 GiB | |
Arima | fBarBar1 | 124.13 Gbp | 235.04x | 36.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.53 Gbp.
Last upload on 9 February 2023.
Coverage based on genome size 0.53 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fBarBar1 | PacBio HiFi (.bam) | 18.84 Gbp | 35.67x | 11.3 GiB | |
Arima | 124.13 Gbp | 235.04x | 36.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.53 Gbp.
Last upload on 9 February 2023.
Coverage based on genome size 0.53 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 February 2023
fBarBar1.pri.cur.20230228.fasta.gz (168.6 MiB)
Quality: not computed
Version assembly_curated from 28 February 2023
fBarBar1.pri.cur.20230228.fasta.gz (168.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 6.18 Mbp | 1 | 33.03 Mbp |
20 | 15 | 4.96 Mbp | 3 | 28.56 Mbp |
30 | 27 | 4.21 Mbp | 5 | 26.40 Mbp |
40 | 40 | 3.61 Mbp | 7 | 25.44 Mbp |
50 | 56 | 3.20 Mbp | 9 | 24.51 Mbp |
60 | 74 | 2.59 Mbp | 11 | 24.42 Mbp |
70 | 98 | 1.90 Mbp | 13 | 23.69 Mbp |
80 | 129 | 1.50 Mbp | 15 | 23.13 Mbp |
90 | 172 | 1.03 Mbp | 18 | 22.75 Mbp |
100 | 243 | 0.54 Mbp | 20 | 21.57 Mbp |
1.169x | 925 | 0.62 Gbp | 100 | 0.62 Gbp |
NG based on genome size 0.53 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 February 2023
fBarBar1.alt.cur.20230228.fasta.gz (158.6 MiB)
Quality: not computed
Version assembly_curated from 28 February 2023
fBarBar1.alt.cur.20230228.fasta.gz (158.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 22 | 1.81 Mbp | 22 | 1.81 Mbp |
20 | 57 | 1.34 Mbp | 57 | 1.34 Mbp |
30 | 103 | 1.02 Mbp | 103 | 1.02 Mbp |
40 | 160 | 0.83 Mbp | 160 | 0.83 Mbp |
50 | 232 | 0.66 Mbp | 232 | 0.66 Mbp |
60 | 321 | 0.53 Mbp | 321 | 0.53 Mbp |
70 | 435 | 400.50 Kbp | 435 | 400.50 Kbp |
80 | 593 | 283.08 Kbp | 593 | 283.08 Kbp |
90 | 817 | 185.51 Kbp | 817 | 185.51 Kbp |
100 | 1219 | 89.80 Kbp | 1219 | 89.80 Kbp |
1.083x | 2237 | 0.57 Gbp | 2237 | 0.57 Gbp |
NG based on genome size 0.53 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.