Bos_taurus

Bos taurus

cattle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -

metadata.yaml (view) (edit on github)
species: short_name: mBosTau name: Bos taurus common_name: cattle taxon_id: 9913 order: name: Artiodactyla family: name: Bovidae individuals: - short_name: mBosTau1 name: null biosample_id: null strain: null alt_ids: null sex: null birth_date: null birth_location: null birth_type: null description: null provider: null mother: null father: null project: [ vgp ] - short_name: mBosTau2 name: null biosample_id: null strain: null alt_ids: - LVC_Rachael_25X sex: female birth_date: null birth_location: null birth_type: null description: This is the dam of mBosGat1 (Bos gaurus x Bos taurus). provider: null mother: null father: null project: [ t2t ] genome_size: 2700000000 genome_size_method: null project: [ vgp ]

species:
  short_name: mBosTau
  name: Bos taurus
  common_name: cattle
  taxon_id: 9913
  order:
    name: Artiodactyla
  family:
    name: Bovidae
  individuals:
  -
      short_name: mBosTau1
      name: null
      biosample_id: null
      strain: null
      alt_ids: null
      sex: null
      birth_date: null
      birth_location: null
      birth_type: null
      description: null
      provider: null
      mother: null
      father: null
      project: [ vgp ]
  -
      short_name: mBosTau2
      name: null
      biosample_id: null
      strain: null
      alt_ids:
      - LVC_Rachael_25X
      sex: female
      birth_date: null
      birth_location: null
      birth_type: null
      description: This is the dam of mBosGat1 (Bos gaurus x Bos taurus).
      provider: null
      mother: null
      father: null
      project: [ t2t ]
  genome_size: 2700000000
  genome_size_method: null
  project: [ vgp ]

public domain

Datatype	Individual	Bases	Coverage	Bytes
PacBio CLR	mBosTau1	361.14 Gbp	133.76x	0.9 TiB
10x	mBosTau1	200.22 Gbp	74.16x	102.8 GiB
Bionano	mBosTau1	N/A	284.15x	1.1 GiB
Phase	mBosTau1	32.36 Gbp	11.98x	18.5 GiB
Illumina	mBosTau1	235.68 Gbp	87.29x	152.5 GiB

Bases and Coverage are approximate.
Coverage based on genome size 2.70 Gbp.
Last upload on 24 December 2019.

Individual	Datatype	Bases	Coverage	Bytes
mBosTau1	PacBio CLR	361.14 Gbp	133.76x	0.9 TiB
	10x	200.22 Gbp	74.16x	102.8 GiB
	Bionano	N/A	284.15x	1.1 GiB
	Phase	32.36 Gbp	11.98x	18.5 GiB
	Illumina	235.68 Gbp	87.29x	152.5 GiB

Bases and Coverage are approximate.
Coverage based on genome size 2.70 Gbp.
Last upload on 24 December 2019.

Individual 1 Maternal Assembly
Version assembly_curated from 13 February 2020
mBosTau1.mat.cur.20200213.fasta.gz (776.6 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	3	63.69 Mbp	1	145.54 Mbp
20	8	47.65 Mbp	3	120.79 Mbp
30	14	38.56 Mbp	6	117.22 Mbp
40	22	32.06 Mbp	8	110.43 Mbp
50	31	26.76 Mbp	10	104.47 Mbp
60	42	24.09 Mbp	13	84.27 Mbp
70	55	17.44 Mbp	17	72.62 Mbp
80	73	12.95 Mbp	21	62.58 Mbp
90	106	5.48 Mbp	25	51.31 Mbp
100	0		0
0.992x	1553	2.68 Gbp	1252	2.68 Gbp

NG based on genome size 2.70 Gbp.

Individual 1 Paternal Assembly
Version assembly_curated from 13 February 2020
mBosTau1.pat.cur.20200213.fasta.gz (742.9 MiB)

Quality: 48.2 errors/Mb (QV=43.17)

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	3	73.60 Mbp	1	134.17 Mbp
20	7	61.25 Mbp	4	119.44 Mbp
30	12	45.73 Mbp	6	112.63 Mbp
40	18	39.81 Mbp	8	106.48 Mbp
50	25	35.24 Mbp	11	91.13 Mbp
60	35	22.38 Mbp	14	82.50 Mbp
70	48	17.34 Mbp	18	69.72 Mbp
80	69	10.04 Mbp	22	60.72 Mbp
90	114	2.71 Mbp	27	44.12 Mbp
100	0		0
0.953x	1718	2.57 Gbp	1427	2.58 Gbp

NG based on genome size 2.70 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_curated from 7 October 2019
mBosTau1.mat.cur.20191007.MT.fasta.gz (5.2 KiB)

Quality: not computed

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.