Branchiostoma lanceolatum
amphioxus
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Parent Géry (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 0.58 Gbp.
Last upload on 21 June 2023.
Coverage based on genome size 0.58 Gbp.
Last upload on 21 June 2023.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 0.58 Gbp.
Last upload on 21 June 2023.
Coverage based on genome size 0.58 Gbp.
Last upload on 21 June 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 14 December 2022
iBraLan1.HiC.hap1.20221214.fasta.gz (135.6 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 14 December 2022
iBraLan1.HiC.hap1.20221214.fasta.gz (135.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 24.03 Mbp | 0 | 59.25 Mbp |
20 | 4 | 19.14 Mbp | 1 | 40.22 Mbp |
30 | 6 | 18.14 Mbp | 3 | 32.88 Mbp |
40 | 9 | 17.99 Mbp | 4 | 25.60 Mbp |
50 | 12 | 16.38 Mbp | 6 | 23.14 Mbp |
60 | 15 | 14.88 Mbp | 8 | 22.28 Mbp |
70 | 18 | 12.89 Mbp | 11 | 19.57 Mbp |
80 | 23 | 7.47 Mbp | 13 | 18.94 Mbp |
90 | 33 | 3.09 Mbp | 16 | 16.72 Mbp |
100 | 177 | 17.02 Kbp | 131 | 17.02 Kbp |
1.000x | 178 | 473.21 Mbp | 132 | 473.22 Mbp |
NG based on genome size 0.58 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 14 December 2022
iBraLan1.HiC.hap2.20221214.fasta.gz (126.4 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 14 December 2022
iBraLan1.HiC.hap2.20221214.fasta.gz (126.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 23.51 Mbp | 1 | 43.29 Mbp |
20 | 3 | 19.00 Mbp | 2 | 40.91 Mbp |
30 | 6 | 18.05 Mbp | 3 | 34.18 Mbp |
40 | 8 | 17.06 Mbp | 4 | 31.54 Mbp |
50 | 11 | 15.10 Mbp | 6 | 24.09 Mbp |
60 | 14 | 11.17 Mbp | 7 | 22.27 Mbp |
70 | 19 | 8.58 Mbp | 10 | 20.35 Mbp |
80 | 26 | 5.52 Mbp | 12 | 19.69 Mbp |
90 | 37 | 2.12 Mbp | 14 | 17.96 Mbp |
100 | 103 | 21.93 Kbp | 46 | 21.93 Kbp |
1.000x | 104 | 442.08 Mbp | 47 | 442.09 Mbp |
NG based on genome size 0.58 Gbp.
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 18 June 2024
klBraLanc2.hap1.cur.20240618.fasta.gz (133.6 MiB)
Quality: not computed
Version assembly_curated from 18 June 2024
klBraLanc2.hap1.cur.20240618.fasta.gz (133.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 7.89 Mbp | 2 | 40.94 Mbp |
20 | 15 | 6.26 Mbp | 3 | 34.89 Mbp |
30 | 26 | 4.21 Mbp | 5 | 27.24 Mbp |
40 | 42 | 3.27 Mbp | 8 | 24.11 Mbp |
50 | 61 | 2.66 Mbp | 10 | 21.35 Mbp |
60 | 85 | 2.19 Mbp | 13 | 20.22 Mbp |
70 | 117 | 1.46 Mbp | 16 | 17.47 Mbp |
80 | 197 | 197.70 Kbp | 19 | 15.82 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.812x | 333 | 468.38 Mbp | 122 | 468.42 Mbp |
NG based on genome size 0.58 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 18 June 2024
klBraLanc2.hap2.cur.20240618.fasta.gz (133.3 MiB)
Quality: not computed
Version assembly_curated from 18 June 2024
klBraLanc2.hap2.cur.20240618.fasta.gz (133.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 8 | 6.83 Mbp | 2 | 40.96 Mbp |
20 | 17 | 5.24 Mbp | 3 | 33.84 Mbp |
30 | 30 | 4.40 Mbp | 5 | 27.13 Mbp |
40 | 44 | 3.63 Mbp | 8 | 23.57 Mbp |
50 | 62 | 2.92 Mbp | 10 | 20.70 Mbp |
60 | 84 | 2.25 Mbp | 13 | 19.87 Mbp |
70 | 118 | 1.25 Mbp | 16 | 18.17 Mbp |
80 | 206 | 144.64 Kbp | 23 | 246.99 Kbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.807x | 288 | 465.77 Mbp | 100 | 465.81 Mbp |
NG based on genome size 0.58 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 11 April 2024
klBraLanc2.MT.20240411.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_cambridge from 11 April 2024
klBraLanc2.MT.20240411.fasta.gz (4.9 KiB)
Quality: not computed
Individual 5 Haplotype 1 Assembly
Version assembly_curated from 20 June 2023
klBraLanc5.hap1.cur.20230620.fasta.gz (130.2 MiB)
Quality: not computed
Version assembly_curated from 20 June 2023
klBraLanc5.hap1.cur.20230620.fasta.gz (130.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 21.04 Mbp | 2 | 41.55 Mbp |
20 | 6 | 18.05 Mbp | 3 | 34.41 Mbp |
30 | 10 | 14.90 Mbp | 5 | 25.68 Mbp |
40 | 14 | 12.29 Mbp | 8 | 23.01 Mbp |
50 | 20 | 8.76 Mbp | 10 | 20.78 Mbp |
60 | 27 | 6.80 Mbp | 13 | 19.58 Mbp |
70 | 38 | 3.57 Mbp | 16 | 17.07 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.789x | 146 | 455.25 Mbp | 65 | 455.26 Mbp |
NG based on genome size 0.58 Gbp.
Individual 5 Haplotype 2 Assembly
Version assembly_curated from 20 June 2023
klBraLanc5.hap2.cur.20230620.fasta.gz (120.3 MiB)
Quality: not computed
Version assembly_curated from 20 June 2023
klBraLanc5.hap2.cur.20230620.fasta.gz (120.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 16.79 Mbp | 2 | 40.41 Mbp |
20 | 7 | 15.38 Mbp | 3 | 34.45 Mbp |
30 | 11 | 14.55 Mbp | 5 | 25.72 Mbp |
40 | 16 | 11.20 Mbp | 8 | 22.63 Mbp |
50 | 22 | 8.34 Mbp | 10 | 20.57 Mbp |
60 | 30 | 5.15 Mbp | 13 | 19.39 Mbp |
70 | 44 | 2.82 Mbp | 16 | 18.55 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.794x | 137 | 458.27 Mbp | 34 | 458.29 Mbp |
NG based on genome size 0.58 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.