Bucephala clangula

common goldeneye

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bBucCla
  name: Bucephala clangula
  taxon_id: 107022
  common_name: common goldeneye
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bBucCla1
      biosample_id: SAMEA112468123
      sex: male
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bBucCla1 56.36 Gbp 40.87x 34.0 GiB
Arima bBucCla1 54.50 Gbp 39.52x 16.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bBucCla1 PacBio HiFi (.bam) 56.36 Gbp 40.87x 34.0 GiB
Arima 54.50 Gbp 39.52x 16.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 29 May 2024
bBucCla1.pri.cur.20240529.fasta.gz (341.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.95 Mbp 2 120.40 Mbp
20 29 7.18 Mbp 3 96.81 Mbp
30 50 5.95 Mbp 4 89.14 Mbp
40 75 4.77 Mbp 6 77.85 Mbp
50 108 3.75 Mbp 8 65.89 Mbp
60 150 2.86 Mbp 11 33.13 Mbp
70 211 1.79 Mbp 17 20.45 Mbp
80 326 0.69 Mbp 28 6.81 Mbp
90 0 0
100 0 0
0.864x 992 1.19 Gbp 538 1.19 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 29 May 2024
bBucCla1.alt.cur.20240529.fasta.gz (278.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 4.03 Mbp 25 4.03 Mbp
20 68 2.74 Mbp 68 2.74 Mbp
30 127 1.88 Mbp 127 1.88 Mbp
40 220 1.19 Mbp 220 1.19 Mbp
50 364 0.74 Mbp 364 0.74 Mbp
60 677 236.06 Kbp 677 236.06 Kbp
70 4081 12.81 Kbp 4081 12.81 Kbp
80 0 0
90 0 0
100 0 0
0.701x 4146 0.97 Gbp 4146 0.97 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bBucCla1.MT.20231107.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.