Calonectris borealis

Cory's Shearwater

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bCalBor
  name: Calonectris borealis
  taxon_id: 1323832
  common_name: Cory's Shearwater
  order:
    name: Procellariiformes
  family:
    name: Procellariidae
  individuals:
    - short_name: bCalBor6
      biosample_id: SAMEA8228670
      sex: female
    - short_name: bCalBor7
      biosample_id: SAMEA114294356
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC0 1.0 Universal, Hobbyfotowiki (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bCalBor6 2.56 Gbp N/A 9.1 GiB
bCalBor7 79.21 Gbp N/A 25.7 GiB
Arima bCalBor6 124.86 Gbp N/A 58.4 GiB
bCalBor7 68.85 Gbp N/A 20.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCalBor6 PacBio HiFi (.bam) 2.56 Gbp N/A 9.1 GiB
Arima 124.86 Gbp N/A 58.4 GiB
bCalBor7 PacBio HiFi (.bam) 79.21 Gbp N/A 25.7 GiB
Arima 68.85 Gbp N/A 20.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 5 March 2024.
Assemblies
Individual 7 Haplotype 1 Assembly
Version assembly_curated from 11 July 2024
bCalBor7.hap1.cur.20240711.fasta.gz (389.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.70 Mbp 1 221.11 Mbp
20 28 7.65 Mbp 2 171.79 Mbp
30 47 6.68 Mbp 3 129.33 Mbp
40 70 5.34 Mbp 4 87.72 Mbp
50 99 4.14 Mbp 5 86.02 Mbp
60 136 3.23 Mbp 8 44.95 Mbp
70 186 2.39 Mbp 11 30.47 Mbp
80 252 1.74 Mbp 17 23.79 Mbp
90 348 1.13 Mbp 25 9.97 Mbp
100 880 1.00 Kbp 355 1.00 Kbp
1.000x 880 1.37 Gbp 355 1.37 Gbp
NG based on genome size .
Individual 7 Haplotype 2 Assembly
Version assembly_curated from 11 July 2024
bCalBor7.hap2.cur.20240711.fasta.gz (345.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 10.27 Mbp 1 220.95 Mbp
20 24 7.63 Mbp 2 171.96 Mbp
30 42 6.09 Mbp 2 171.96 Mbp
40 65 4.85 Mbp 3 129.08 Mbp
50 92 4.11 Mbp 4 86.67 Mbp
60 124 3.38 Mbp 7 44.82 Mbp
70 165 2.52 Mbp 10 27.80 Mbp
80 220 1.82 Mbp 15 22.80 Mbp
90 304 1.13 Mbp 23 9.90 Mbp
100 759 1.00 Kbp 281 1.00 Kbp
1.000x 759 1.21 Gbp 281 1.21 Gbp
NG based on genome size .
Individual 7 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 May 2024
bCalBor7.MT.20240507.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.