Caprimulgus europaeus

Eurasian nightjar

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bCapEur3: GCA_907165065.1 bCapEur3: GCA_907165095.1
ENA bCapEur3: GCA_907165065.1 bCapEur3: GCA_907165095.1
UCSC Genome Browser bCapEur3: GCA_907165065.1 bCapEur3: GCA_907165095.1

metadata.yaml (view) (edit on github)
species:
  short_name: bCapEur
  name: Caprimulgus europaeus
  taxon_id: 111811
  common_name: Eurasian nightjar
  order:
    name: Caprimulgiformes
  family:
    name: Caprimulgidae
  individuals:
    - short_name: bCapEur3
      biosample_id: SAMEA7524393
      sex: female
  genome_size: 1183056838
  genome_size_method: genomescope (k=31)
  project: [ vgp ]
CC BY-SA 3.0 Dûrzan Cîrano (wikipedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bCapEur3 159.26 Gbp 134.62x 284.4 GiB
10x bCapEur3 129.67 Gbp 109.61x 80.0 GiB
Bionano bCapEur3 N/A 1276.94x 2.6 GiB
Arima bCapEur3 70.60 Gbp 59.67x 41.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.18 Gbp.
Last upload on 18 December 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCapEur3 PacBio CLR 159.26 Gbp 134.62x 284.4 GiB
10x 129.67 Gbp 109.61x 80.0 GiB
Bionano N/A 1276.94x 2.6 GiB
Arima 70.60 Gbp 59.67x 41.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.18 Gbp.
Last upload on 18 December 2021.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 1 April 2021
bCapEur3.pri.cur.20210401.fasta.gz (342.4 MiB)

Quality: 3.9 errors/Mb (QV=54.06)

Contigs Scaffolds
NG LG Len LG Len
10 1 92.54 Mbp 0 126.32 Mbp
20 2 64.62 Mbp 1 125.37 Mbp
30 4 58.89 Mbp 3 83.32 Mbp
40 7 43.91 Mbp 4 82.63 Mbp
50 10 30.62 Mbp 5 82.61 Mbp
60 14 25.73 Mbp 7 60.47 Mbp
70 19 17.93 Mbp 10 43.00 Mbp
80 28 10.47 Mbp 13 22.81 Mbp
90 46 4.18 Mbp 19 15.70 Mbp
100 0 0
0.996x 274 1.18 Gbp 121 1.18 Gbp
NG based on genome size 1.18 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 1 April 2021
bCapEur3.alt.cur.20210401.fasta.gz (306.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 40 2.12 Mbp 40 2.12 Mbp
20 107 1.50 Mbp 107 1.50 Mbp
30 199 1.15 Mbp 199 1.15 Mbp
40 317 0.87 Mbp 317 0.87 Mbp
50 478 0.62 Mbp 478 0.62 Mbp
60 698 466.72 Kbp 698 466.72 Kbp
70 999 324.98 Kbp 999 324.98 Kbp
80 1464 196.22 Kbp 1464 196.22 Kbp
90 0 0
100 0 0
0.889x 2527 1.05 Gbp 2502 1.05 Gbp
NG based on genome size 1.18 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.