Castor fiber

Eurasian beaver

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mCasFib1: GCA_977036005.1 mCasFib1: GCA_977035955.1
ENA mCasFib1: GCA_977036005.1 mCasFib1: GCA_977035955.1
UCSC Genome Browser mCasFib1: GCA_977036005.1 mCasFib1: GCA_977035955.1

metadata.yaml (view) (edit on github)
species:
  short_name: mCasFib
  name: Castor fiber
  taxon_id: 10185
  common_name: Eurasian beaver
  order:
    name: Rodentia
  family:
    name: Castoridae
  individuals:
    - short_name: mCasFib2
      biosample_id: SAMEA9654422
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0, NasserHalaweh (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
Arima mCasFib2 549.87 Gbp 194.70x 260.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.82 Gbp.
Last upload on 18 December 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mCasFib2 Arima 549.87 Gbp 194.70x 260.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.82 Gbp.
Last upload on 18 December 2021.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 18 November 2025
mCasFib1.pri.cur.20251118.fasta.gz (793.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 99.66 Mbp 2 205.60 Mbp
20 6 85.69 Mbp 3 200.47 Mbp
30 10 64.74 Mbp 5 180.59 Mbp
40 14 61.65 Mbp 6 180.27 Mbp
50 20 48.52 Mbp 8 144.29 Mbp
60 27 36.70 Mbp 10 115.69 Mbp
70 36 25.05 Mbp 13 99.31 Mbp
80 50 17.40 Mbp 16 79.01 Mbp
90 74 6.47 Mbp 20 62.23 Mbp
100 465 1.00 Kbp 228 1.00 Kbp
1.000x 465 2.82 Gbp 228 2.82 Gbp
NG based on genome size 2.82 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 November 2025
mCasFib1.alt.cur.20251118.fasta.gz (547.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 169 0.86 Mbp 2 111.24 Mbp
20 462 0.60 Mbp 4 99.80 Mbp
30 858 450.06 Kbp 6 93.70 Mbp
40 1375 352.48 Kbp 9 70.99 Mbp
50 2041 269.23 Kbp 12 67.93 Mbp
60 2933 197.74 Kbp 15 57.16 Mbp
70 4174 138.27 Kbp 20 41.54 Mbp
80 6088 83.43 Kbp 33 4.95 Mbp
90 9588 42.18 Kbp 313 274.00 Kbp
100 17640 120 bp 5227 317 bp
1.000x 17640 2.05 Gbp 5227 2.05 Gbp
NG based on genome size 2.82 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.