Cepola macrophthalma

red bandfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCepMac
  name: Cepola macrophthalma
  taxon_id: 334382
  common_name: red bandfish
  order:
    name: Perciformes
  family:
    name: Cepolidae
  individuals:
    - short_name: fCepMac1
      biosample_id: SAMEA112788985
      sex:
  genome_size: 797070000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCepMac1 63.02 Gbp 79.06x 23.0 GiB
Arima fCepMac1 222.72 Gbp 279.42x 61.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCepMac1 PacBio HiFi (.bam) 63.02 Gbp 79.06x 23.0 GiB
Arima 222.72 Gbp 279.42x 61.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 6 January 2026
fCepMac1.hap1.cur.20260106.fasta.gz (148.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 5.25 Mbp 4 24.58 Mbp
20 27 4.10 Mbp 7 23.71 Mbp
30 50 2.89 Mbp 10 21.48 Mbp
40 86 1.77 Mbp 14 20.10 Mbp
50 144 1.07 Mbp 19 18.25 Mbp
60 251 493.00 Kbp 23 14.39 Mbp
70 567 119.55 Kbp 125 202.00 Kbp
80 0 0
90 0 0
100 0 0
0.735x 1271 0.59 Gbp 738 0.59 Gbp
NG based on genome size 0.80 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 6 January 2026
fCepMac1.hap2.cur.20260106.fasta.gz (146.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 5.35 Mbp 4 24.08 Mbp
20 29 4.19 Mbp 7 23.39 Mbp
30 51 2.80 Mbp 11 20.65 Mbp
40 86 1.76 Mbp 15 19.85 Mbp
50 143 1.04 Mbp 19 18.09 Mbp
60 253 477.07 Kbp 24 11.77 Mbp
70 601 95.80 Kbp 151 181.59 Kbp
80 0 0
90 0 0
100 0 0
0.722x 1076 0.58 Gbp 544 0.58 Gbp
NG based on genome size 0.80 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
fCepMac1.MT.20240405.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.