Chionomys nivalis
European snow vole
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mChiNiv1: GCA_950005125.1 | mChiNiv1: GCA_950005115.1 |
ENA | mChiNiv1: GCA_950005125.1 | mChiNiv1: GCA_950005115.1 |
UCSC Genome Browser | mChiNiv1: GCA_950005125.1 | mChiNiv1: GCA_950005115.1 |
metadata.yaml (view) (edit on github) |
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CC BY-NC-SA 2.0 Alexandre Roux (flickr)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | mChiNiv1 | 64.74 Gbp | 22.75x | 100.9 GiB | |
Arima | mChiNiv1 | 530.31 Gbp | 186.34x | 150.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.85 Gbp.
Last upload on 9 February 2023.
Coverage based on genome size 2.85 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mChiNiv1 | PacBio HiFi (.bam) | 64.74 Gbp | 22.75x | 100.9 GiB | |
Arima | 530.31 Gbp | 186.34x | 150.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.85 Gbp.
Last upload on 9 February 2023.
Coverage based on genome size 2.85 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 April 2023
mChiNiv1.pri.cur.20230421.fasta.gz (684.6 MiB)
Quality: not computed
Version assembly_curated from 21 April 2023
mChiNiv1.pri.cur.20230421.fasta.gz (684.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 5 | 61.94 Mbp | 2 | 137.63 Mbp |
20 | 9 | 53.30 Mbp | 4 | 127.61 Mbp |
30 | 16 | 42.13 Mbp | 7 | 102.99 Mbp |
40 | 23 | 33.90 Mbp | 9 | 97.49 Mbp |
50 | 33 | 24.78 Mbp | 13 | 78.63 Mbp |
60 | 47 | 17.67 Mbp | 17 | 69.32 Mbp |
70 | 70 | 9.08 Mbp | 21 | 62.30 Mbp |
80 | 141 | 1.83 Mbp | 26 | 42.74 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.841x | 358 | 2.39 Gbp | 161 | 2.39 Gbp |
NG based on genome size 2.85 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 April 2023
mChiNiv1.alt.cur.20230421.fasta.gz (582.0 MiB)
Quality: not computed
Version assembly_curated from 21 April 2023
mChiNiv1.alt.cur.20230421.fasta.gz (582.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 91 | 2.51 Mbp | 91 | 2.51 Mbp |
20 | 225 | 1.86 Mbp | 225 | 1.86 Mbp |
30 | 408 | 1.34 Mbp | 408 | 1.34 Mbp |
40 | 654 | 1.00 Mbp | 654 | 1.00 Mbp |
50 | 991 | 0.71 Mbp | 991 | 0.71 Mbp |
60 | 1504 | 429.15 Kbp | 1504 | 429.15 Kbp |
70 | 3148 | 40.81 Kbp | 3147 | 40.81 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.711x | 4256 | 2.02 Gbp | 4255 | 2.02 Gbp |
NG based on genome size 2.85 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.