Clangula hyemalis
long-tailed duck
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bClaHye2 | 52.62 Gbp | 38.16x | 30.9 GiB | |
Arima | bClaHye2 | 54.32 Gbp | 39.39x | 16.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bClaHye2 | PacBio HiFi (.bam) | 52.62 Gbp | 38.16x | 30.9 GiB | |
Arima | 54.32 Gbp | 39.39x | 16.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Coverage based on genome size 1.38 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 1 May 2024
bClaHye2.pri.cur.20240501.fasta.gz (339.8 MiB)
Quality: not computed
Version assembly_curated from 1 May 2024
bClaHye2.pri.cur.20240501.fasta.gz (339.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 8.69 Mbp | 1 | 207.63 Mbp |
20 | 32 | 6.67 Mbp | 2 | 158.76 Mbp |
30 | 57 | 4.97 Mbp | 3 | 121.98 Mbp |
40 | 87 | 4.14 Mbp | 4 | 85.19 Mbp |
50 | 125 | 3.25 Mbp | 6 | 65.83 Mbp |
60 | 173 | 2.53 Mbp | 9 | 33.21 Mbp |
70 | 237 | 1.75 Mbp | 15 | 21.11 Mbp |
80 | 339 | 0.97 Mbp | 27 | 7.00 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.875x | 816 | 1.21 Gbp | 272 | 1.21 Gbp |
NG based on genome size 1.38 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 1 May 2024
bClaHye2.alt.cur.20240501.fasta.gz (243.7 MiB)
Quality: not computed
Version assembly_curated from 1 May 2024
bClaHye2.alt.cur.20240501.fasta.gz (243.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 29 | 3.83 Mbp | 29 | 3.83 Mbp |
20 | 77 | 2.33 Mbp | 77 | 2.33 Mbp |
30 | 147 | 1.64 Mbp | 147 | 1.64 Mbp |
40 | 247 | 1.13 Mbp | 247 | 1.13 Mbp |
50 | 412 | 0.60 Mbp | 412 | 0.60 Mbp |
60 | 933 | 75.10 Kbp | 932 | 75.10 Kbp |
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.619x | 1868 | 0.85 Gbp | 1867 | 0.85 Gbp |
NG based on genome size 1.38 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 November 2023
bClaHye2.MT.20231107.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 7 November 2023
bClaHye2.MT.20231107.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.