Coloeus monedula

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bColMon
  name: Coloeus monedula
  taxon_id: 30423
  common_name: 
  order:
    name: Passeriformes
  family:
    name: Corvidae
  individuals:
    - short_name: bColMon1
      biosample_id: SAMEA115433023
      sex: female
  genome_size: 1222500000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bColMon2 99.25 Gbp 81.18x 46.4 GiB
PacBio HiFi (.bam) bColMon1 83.55 Gbp 68.34x 24.5 GiB
bColMon2 101.93 Gbp 83.38x 331.3 GiB
Arima bColMon1 126.66 Gbp 103.60x 33.9 GiB
bColMon2 34.27 Gbp 28.03x 18.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 2 September 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bColMon1 PacBio HiFi (.bam) 83.55 Gbp 68.34x 24.5 GiB
Arima 126.66 Gbp 103.60x 33.9 GiB
bColMon2 PacBio HiFi (.fq) 99.25 Gbp 81.18x 46.4 GiB
PacBio HiFi (.bam) 101.93 Gbp 83.38x 331.3 GiB
Arima 34.27 Gbp 28.03x 18.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 2 September 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 27 February 2025
bColMon1.hap1.cur.20250227.fasta.gz (349.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.40 Mbp 1 161.07 Mbp
20 28 6.46 Mbp 2 120.39 Mbp
30 49 5.35 Mbp 3 119.59 Mbp
40 75 4.32 Mbp 5 76.53 Mbp
50 107 3.46 Mbp 6 75.39 Mbp
60 147 2.68 Mbp 8 40.58 Mbp
70 202 1.92 Mbp 12 26.68 Mbp
80 280 1.30 Mbp 17 19.17 Mbp
90 411 0.66 Mbp 28 6.98 Mbp
100 768 162.25 Kbp 184 227.62 Kbp
1.034x 1377 1.26 Gbp 729 1.26 Gbp
NG based on genome size 1.22 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 27 February 2025
bColMon1.hap2.cur.20250227.fasta.gz (308.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.29 Mbp 1 157.88 Mbp
20 30 6.12 Mbp 2 120.08 Mbp
30 52 4.87 Mbp 3 119.33 Mbp
40 80 4.05 Mbp 5 74.41 Mbp
50 116 2.86 Mbp 6 64.96 Mbp
60 165 2.08 Mbp 10 26.66 Mbp
70 236 1.38 Mbp 16 17.30 Mbp
80 374 0.52 Mbp 27 5.90 Mbp
90 1314 28.61 Kbp 742 29.60 Kbp
100 0 0
0.907x 1744 1.11 Gbp 1173 1.11 Gbp
NG based on genome size 1.22 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 July 2024
bColMon1.MT.20240722.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.