Cottoperca gobio
channel bull blenny
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fCotGob3: GCA_900634415.1 | fCotGob3: GCA_900634435.1 |
ENA | fCotGob3: GCA_900634415.1 | fCotGob3: GCA_900634435.1 |
UCSC Genome Browser | fCotGob3: GCA_900634415.1 | fCotGob3: GCA_900634435.1 |
metadata.yaml (view) (edit on github) |
---|
Copyright Chris Cheng, used with permission
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 0.70 Gbp.
Last upload on 7 May 2024.
Coverage based on genome size 0.70 Gbp.
Last upload on 7 May 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fCotGob2 | Arima | 183.15 Gbp | 261.64x | 74.7 GiB | |
fCotGob3 | PacBio CLR | 48.60 Gbp | 69.44x | 86.7 GiB | |
10x | 98.10 Gbp | 140.15x | 65.7 GiB | ||
Bionano | N/A | 3785.21x | 3.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.70 Gbp.
Last upload on 7 May 2024.
Coverage based on genome size 0.70 Gbp.
Last upload on 7 May 2024.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 26 October 2018
fCotGob3.pri.cur.20181026.fasta.gz (160.1 MiB)
Quality: 438.6 errors/Mb (QV=33.58)
Version assembly_curated from 26 October 2018
fCotGob3.pri.cur.20181026.fasta.gz (160.1 MiB)
Quality: 438.6 errors/Mb (QV=33.58)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 18.77 Mbp | 2 | 30.03 Mbp |
20 | 8 | 12.18 Mbp | 4 | 27.74 Mbp |
30 | 14 | 8.97 Mbp | 7 | 27.06 Mbp |
40 | 24 | 6.45 Mbp | 9 | 25.70 Mbp |
50 | 36 | 5.03 Mbp | 12 | 24.10 Mbp |
60 | 55 | 2.77 Mbp | 15 | 22.90 Mbp |
70 | 90 | 1.38 Mbp | 18 | 22.19 Mbp |
80 | 188 | 357.58 Kbp | 22 | 14.93 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.867x | 767 | 0.61 Gbp | 322 | 0.61 Gbp |
NG based on genome size 0.70 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 26 October 2018
fCotGob3.alt.cur.20181026.fasta.gz (193.7 MiB)
Quality: not computed
Version assembly_curated from 26 October 2018
fCotGob3.alt.cur.20181026.fasta.gz (193.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 102 | 477.83 Kbp | 102 | 477.83 Kbp |
20 | 294 | 303.24 Kbp | 294 | 303.24 Kbp |
30 | 568 | 214.99 Kbp | 568 | 215.75 Kbp |
40 | 959 | 147.54 Kbp | 958 | 147.95 Kbp |
50 | 1541 | 100.17 Kbp | 1539 | 100.26 Kbp |
60 | 2413 | 65.39 Kbp | 2411 | 65.39 Kbp |
70 | 3709 | 45.53 Kbp | 3706 | 45.53 Kbp |
80 | 5563 | 31.56 Kbp | 5560 | 31.56 Kbp |
90 | 8335 | 19.60 Kbp | 8332 | 19.60 Kbp |
100 | 0 | 0 | ||
0.959x | 11565 | 0.67 Gbp | 11555 | 0.67 Gbp |
NG based on genome size 0.70 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.