Cygnus olor
mute swan
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bCygOlo1: GCA_009769625.2 | bCygOlo1: GCA_009769485.2 |
ENA | bCygOlo1: GCA_009769625.2 | bCygOlo1: GCA_009769485.2 |
UCSC Genome Browser | bCygOlo1: GCA_009769625.2 | bCygOlo1: GCA_009769485.2 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Charles J Sharp (wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.48 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 1.48 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.48 Gbp.
Last upload on 5 March 2024.
Coverage based on genome size 1.48 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329.2 MiB)
Quality: 154.4 errors/Mb (QV=38.11)
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329.2 MiB)
Quality: 154.4 errors/Mb (QV=38.11)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 19.51 Mbp | 0 | 209.52 Mbp |
20 | 15 | 14.59 Mbp | 1 | 160.82 Mbp |
30 | 26 | 11.46 Mbp | 2 | 121.08 Mbp |
40 | 41 | 7.74 Mbp | 4 | 77.82 Mbp |
50 | 65 | 4.99 Mbp | 6 | 40.61 Mbp |
60 | 104 | 2.98 Mbp | 11 | 22.22 Mbp |
70 | 190 | 0.93 Mbp | 19 | 12.20 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.760x | 621 | 1.12 Gbp | 170 | 1.13 Gbp |
NG based on genome size 1.48 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (238.7 MiB)
Quality: not computed
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (238.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 149 | 0.74 Mbp | 149 | 0.74 Mbp |
20 | 408 | 461.45 Kbp | 408 | 461.45 Kbp |
30 | 811 | 293.21 Kbp | 811 | 293.21 Kbp |
40 | 1468 | 165.22 Kbp | 1468 | 165.59 Kbp |
50 | 3123 | 48.93 Kbp | 3122 | 48.95 Kbp |
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.550x | 5640 | 0.81 Gbp | 5626 | 0.81 Gbp |
NG based on genome size 1.48 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5.4 KiB)
Quality: not computed
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 8 March 2024
bCygOlo2.hap1.asm.20240308.fasta.gz (320.8 MiB)
Quality: not computed
Version assembly_cambridge from 8 March 2024
bCygOlo2.hap1.asm.20240308.fasta.gz (320.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 18 | 6.61 Mbp | 1 | 212.12 Mbp |
20 | 44 | 4.97 Mbp | 2 | 160.61 Mbp |
30 | 78 | 3.75 Mbp | 3 | 123.17 Mbp |
40 | 123 | 2.97 Mbp | 5 | 75.86 Mbp |
50 | 179 | 2.31 Mbp | 7 | 41.15 Mbp |
60 | 256 | 1.64 Mbp | 12 | 23.12 Mbp |
70 | 369 | 1.04 Mbp | 19 | 14.53 Mbp |
80 | 572 | 466.90 Kbp | 63 | 1.04 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.875x | 1549 | 1.30 Gbp | 828 | 1.30 Gbp |
NG based on genome size 1.48 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 8 March 2024
bCygOlo2.hap2.asm.20240308.fasta.gz (319.3 MiB)
Quality: not computed
Version assembly_cambridge from 8 March 2024
bCygOlo2.hap2.asm.20240308.fasta.gz (319.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 17 | 6.93 Mbp | 1 | 210.90 Mbp |
20 | 42 | 5.21 Mbp | 2 | 161.28 Mbp |
30 | 77 | 3.76 Mbp | 3 | 122.46 Mbp |
40 | 121 | 2.93 Mbp | 5 | 79.44 Mbp |
50 | 180 | 2.12 Mbp | 7 | 41.15 Mbp |
60 | 261 | 1.52 Mbp | 12 | 23.17 Mbp |
70 | 376 | 1.06 Mbp | 19 | 13.65 Mbp |
80 | 581 | 451.67 Kbp | 61 | 1.23 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.871x | 1307 | 1.29 Gbp | 600 | 1.29 Gbp |
NG based on genome size 1.48 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
bCygOlo2.MT.20240308.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_cambridge from 8 March 2024
bCygOlo2.MT.20240308.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.