Elephas maximus

Asiatic elephant

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mEleMax1: GCA_024166365.1 mEleMax1: GCA_024166345.1
ENA mEleMax1: GCA_024166365.1 mEleMax1: GCA_024166345.1
UCSC Genome Browser mEleMax1: GCA_024166365.1 mEleMax1: GCA_024166345.1

metadata.yaml (view) (edit on github)
species:
  name: Elephas maximus
  individuals:
  - short_name: mEleMax1
  short_name: mEleMax
  taxon_id: 9783
  common_name: Asiatic elephant
  genome_size: 3941000000
  genome_size_method: GoAT
  order:
    name: Proboscidea
  family:
    name: Elephantidae
  project: [ vgp ]
CC BY-SA 3.0 Yathin S Krishnappa (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mEleMax1 1180.24 Gbp 299.48x 2.3 TiB
PacBio HiFi (.fq) mEleMax1 137.82 Gbp 34.97x 108.8 GiB
PacBio HiFi (.bam) mEleMax1 137.66 Gbp 34.93x 475.2 GiB
Bionano mEleMax1 N/A 313.92x 2.1 GiB
Arima mEleMax1 277.42 Gbp 70.39x 139.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.94 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEleMax1 PacBio HiFi (subreads) 1180.24 Gbp 299.48x 2.3 TiB
PacBio HiFi (.fq) 137.82 Gbp 34.97x 108.8 GiB
PacBio HiFi (.bam) 137.66 Gbp 34.93x 475.2 GiB
Bionano N/A 313.92x 2.1 GiB
Arima 277.42 Gbp 70.39x 139.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.94 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 June 2022
mEleMax1.pri.cur.20220616.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 192.24 Mbp 1 236.64 Mbp
20 4 123.62 Mbp 3 197.26 Mbp
30 7 117.24 Mbp 5 166.44 Mbp
40 11 94.03 Mbp 8 134.52 Mbp
50 16 77.00 Mbp 11 117.05 Mbp
60 22 52.02 Mbp 15 96.49 Mbp
70 30 36.22 Mbp 19 84.76 Mbp
80 49 11.58 Mbp 24 68.86 Mbp
90 0 0
100 0 0
0.862x 190 3.40 Gbp 64 3.40 Gbp
NG based on genome size 3.94 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 June 2022
mEleMax1.alt.cur.20220616.fasta.gz (844.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 86 3.52 Mbp 86 3.52 Mbp
20 218 2.52 Mbp 218 2.52 Mbp
30 398 1.89 Mbp 398 1.89 Mbp
40 641 1.39 Mbp 641 1.39 Mbp
50 976 0.99 Mbp 976 0.99 Mbp
60 1475 0.61 Mbp 1475 0.61 Mbp
70 2590 148.31 Kbp 2590 148.31 Kbp
80 0 0
90 0 0
100 0 0
0.749x 6361 2.95 Gbp 6361 2.95 Gbp
NG based on genome size 3.94 Gbp.
Assembly Metadata
assembly_curated/mEleMax1.yaml (view)
species: Elephas maximus
specimen: mEleMax1
projects:
  - vgp
primary: s3://genomeark/species/Elephas_maximus/mEleMax1/assembly_vgp_standard_2.0/mEleMax1.pri.asm.20220318.fasta.gz
haplotigs: s3://genomeark/species/Elephas_maximus/mEleMax1/assembly_vgp_standard_2.0/mEleMax1.alt.asm.20220318.fasta.gz
mito: 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.