Erithacus rubecula
European robin
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bEriRub2: GCA_903797595.2 | bEriRub2: GCA_903797565.2 |
ENA | bEriRub2: GCA_903797595.2 | bEriRub2: GCA_903797565.2 |
UCSC Genome Browser | bEriRub2: GCA_903797595.2 | bEriRub2: GCA_903797565.2 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 2.0, Juan Emilio (wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio CLR | bEriRub2 | 74.48 Gbp | 68.53x | 130.1 GiB | |
10x | bEriRub2 | 126.32 Gbp | 116.23x | 78.1 GiB | |
Dovetail Genomics | bEriRub2 | 137.17 Gbp | 126.22x | 85.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bEriRub2 | PacBio CLR | 74.48 Gbp | 68.53x | 130.1 GiB | |
10x | 126.32 Gbp | 116.23x | 78.1 GiB | ||
Dovetail Genomics | 137.17 Gbp | 126.22x | 85.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 3 June 2020
bEriRub2.pri.cur.20200603.fasta.gz (313.1 MiB)
Quality: 74.7 errors/Mb (QV=41.27)
Version assembly_curated from 3 June 2020
bEriRub2.pri.cur.20200603.fasta.gz (313.1 MiB)
Quality: 74.7 errors/Mb (QV=41.27)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 5 | 16.37 Mbp | 0 | 112.10 Mbp |
20 | 12 | 12.24 Mbp | 1 | 109.05 Mbp |
30 | 22 | 10.07 Mbp | 3 | 68.60 Mbp |
40 | 34 | 7.47 Mbp | 4 | 68.52 Mbp |
50 | 51 | 5.59 Mbp | 6 | 46.56 Mbp |
60 | 75 | 3.52 Mbp | 9 | 31.99 Mbp |
70 | 113 | 2.18 Mbp | 13 | 20.40 Mbp |
80 | 189 | 0.92 Mbp | 20 | 13.42 Mbp |
90 | 401 | 284.09 Kbp | 35 | 3.15 Mbp |
100 | 2108 | 1.64 Kbp | 1119 | 9.77 Kbp |
1.000x | 2109 | 1.09 Gbp | 1120 | 1.09 Gbp |
NG based on genome size 1.09 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 3 June 2020
bEriRub2.alt.cur.20200603.fasta.gz (264.1 MiB)
Quality: not computed
Version assembly_curated from 3 June 2020
bEriRub2.alt.cur.20200603.fasta.gz (264.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 32 | 2.06 Mbp | 32 | 2.06 Mbp |
20 | 88 | 1.41 Mbp | 88 | 1.41 Mbp |
30 | 165 | 1.03 Mbp | 165 | 1.03 Mbp |
40 | 269 | 0.77 Mbp | 269 | 0.77 Mbp |
50 | 404 | 0.60 Mbp | 404 | 0.60 Mbp |
60 | 585 | 425.88 Kbp | 584 | 429.50 Kbp |
70 | 842 | 302.47 Kbp | 840 | 303.49 Kbp |
80 | 1232 | 185.31 Kbp | 1226 | 186.41 Kbp |
90 | 1887 | 104.32 Kbp | 1878 | 104.69 Kbp |
100 | 3685 | 222 bp | 3667 | 222 bp |
1.000x | 3686 | 0.91 Gbp | 3668 | 0.91 Gbp |
NG based on genome size 1.09 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.