Falco cherrug

Saker falcon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bFalChe1: GCA_023634085.1 bFalChe1: GCA_023634115.1
ENA bFalChe1: GCA_023634085.1 bFalChe1: GCA_023634115.1
UCSC Genome Browser bFalChe1: GCA_023634085.1 bFalChe1: GCA_023634115.1

metadata.yaml (view) (edit on github)
species:
  short_name: bFalChe
  name: Falco cherrug
  taxon_id: 345164
  common_name: Saker falcon
  order:
    name: Falconiformes
  family:
    name: Falconidae
  individuals:
    - short_name: bFalChe1
      provider: Farooq Al-Ajli
      sex: female
  genome_size: 1420000000
  genome_size_method: GoaT ancestral inferred
  project: [ vgp ]
public domain Damiano Pappadà (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bFalChe1 597.40 Gbp 420.70x 1.1 TiB
PacBio HiFi (.bam) bFalChe1 34.88 Gbp 24.56x 27.4 GiB
Arima bFalChe1 92.92 Gbp 65.44x 59.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bFalChe1 PacBio HiFi (subreads) 597.40 Gbp 420.70x 1.1 TiB
PacBio HiFi (.bam) 34.88 Gbp 24.56x 27.4 GiB
Arima 92.92 Gbp 65.44x 59.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 December 2021
bFalChe1.pri.cur.20211214.fasta.gz (360.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 54.39 Mbp 1 122.55 Mbp
20 5 36.08 Mbp 2 122.44 Mbp
30 10 28.51 Mbp 3 113.31 Mbp
40 16 22.64 Mbp 4 96.47 Mbp
50 22 18.20 Mbp 6 86.07 Mbp
60 33 10.94 Mbp 8 65.64 Mbp
70 50 6.47 Mbp 10 40.33 Mbp
80 92 1.90 Mbp 15 24.36 Mbp
90 281 304.65 Kbp 77 479.73 Kbp
100 0 0
0.919x 540 1.31 Gbp 282 1.31 Gbp
NG based on genome size 1.42 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 December 2021
bFalChe1.alt.cur.20211214.fasta.gz (337.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 41 2.62 Mbp 41 2.62 Mbp
20 105 1.97 Mbp 105 1.97 Mbp
30 188 1.48 Mbp 188 1.48 Mbp
40 299 1.12 Mbp 299 1.12 Mbp
50 448 0.81 Mbp 448 0.81 Mbp
60 658 0.56 Mbp 658 0.56 Mbp
70 990 317.32 Kbp 989 318.14 Kbp
80 1871 73.45 Kbp 1870 73.45 Kbp
90 0 0
100 0 0
0.852x 4162 1.21 Gbp 4160 1.21 Gbp
NG based on genome size 1.42 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.