Falco rusticolus

gyrfalcon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bFalRus1: GCA_015220075.1 bFalRus1: GCA_015220155.1
ENA bFalRus1: GCA_015220075.1 bFalRus1: GCA_015220155.1
UCSC Genome Browser bFalRus1: GCA_015220075.1 bFalRus1: GCA_015220155.1

metadata.yaml (view) (edit on github)
species:
  common_name: gyrfalcon
  family:
    name: Falconidae
  genome_size: 1400000000
  genome_size_method: null
  individuals:
  - short_name: bFalRus1
  name: Falco rusticolus
  order:
    name: Falconiformes
  short_name: bFalRus
  taxon_id: 120794
  project: [ vgp ]
Copyright Qatar Falcon Genome Project, Al-Gannas Qatari Society, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bFalRus1 61.93 Gbp 44.24x 110.0 GiB
10x bFalRus1 150.96 Gbp 107.83x 67.5 GiB
Bionano bFalRus1 N/A 246.43x 585.0 MiB
Arima bFalRus1 118.64 Gbp 84.74x 73.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 January 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bFalRus1 PacBio CLR 61.93 Gbp 44.24x 110.0 GiB
10x 150.96 Gbp 107.83x 67.5 GiB
Bionano N/A 246.43x 585.0 MiB
Arima 118.64 Gbp 84.74x 73.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 January 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 July 2020
bFalRus1.pri.cur.20200720.fasta.gz (349.2 MiB)

Quality: 91.7 errors/Mb (QV=40.38)

Contigs Scaffolds
NG LG Len LG Len
10 2 32.78 Mbp 1 122.15 Mbp
20 7 25.49 Mbp 2 121.28 Mbp
30 13 22.35 Mbp 3 112.44 Mbp
40 21 15.69 Mbp 4 92.44 Mbp
50 31 12.48 Mbp 6 84.79 Mbp
60 44 8.39 Mbp 8 65.42 Mbp
70 66 3.76 Mbp 10 38.16 Mbp
80 193 435.48 Kbp 15 24.10 Mbp
90 0 0
100 0 0
0.850x 767 1.19 Gbp 132 1.20 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 20 July 2020
bFalRus1.alt.cur.20200720.fasta.gz (158.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 841 115.25 Kbp 841 115.25 Kbp
20 2416 70.84 Kbp 2416 70.84 Kbp
30 4980 42.26 Kbp 4980 42.26 Kbp
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.369x 8370 0.52 Gbp 8370 0.52 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
bFalRus1.MT.20191216.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.