Globicephala melas

long-finned pilot whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mGloMel
  name: Globicephala melas
  taxon_id: 9731
  common_name: long-finned pilot whale
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mGloMel1
      biosample_id: SAMEA111380538
      sex: male
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mGloMel1 62.86 Gbp 20.40x 212.3 GiB
Arima mGloMel1 403.66 Gbp 131.03x 125.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mGloMel1 PacBio HiFi (.bam) 62.86 Gbp 20.40x 212.3 GiB
Arima 403.66 Gbp 131.03x 125.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 September 2024
mGloMel1.pri.cur.20240904.fasta.gz (708.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 7.74 Mbp 2 178.82 Mbp
20 79 5.63 Mbp 4 146.48 Mbp
30 141 4.38 Mbp 6 125.80 Mbp
40 219 3.52 Mbp 9 108.12 Mbp
50 319 2.70 Mbp 12 102.70 Mbp
60 450 2.07 Mbp 15 88.67 Mbp
70 639 1.27 Mbp 19 79.70 Mbp
80 1000 0.53 Mbp 86 0.92 Mbp
90 0 0
100 0 0
0.861x 2077 2.65 Gbp 993 2.65 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 September 2024
mGloMel1.alt.cur.20240904.fasta.gz (566.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 635 334.91 Kbp 635 334.91 Kbp
20 1777 225.66 Kbp 1777 225.66 Kbp
30 3438 155.14 Kbp 3438 155.14 Kbp
40 5866 104.28 Kbp 5866 104.28 Kbp
50 9719 60.44 Kbp 9719 60.44 Kbp
60 17497 26.37 Kbp 17497 26.37 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.663x 28097 2.04 Gbp 28097 2.04 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 August 2023
mGloMel1.MT.20230808.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.