Grus grus

Eurasian crane

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bGruGru
  name: Grus grus
  taxon_id: 40816
  common_name: Eurasian crane
  order:
    name: Gruiformes
  family:
    name: Gruidae
  individuals:
    - short_name: bGruGru1
      biosample_id: SAMEA113398837
      sex: male
  genome_size: 1486560000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bGruGru1 59.49 Gbp 40.02x 17.4 GiB
Arima bGruGru1 58.57 Gbp 39.40x 16.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.49 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bGruGru1 PacBio HiFi (.bam) 59.49 Gbp 40.02x 17.4 GiB
Arima 58.57 Gbp 39.40x 16.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.49 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 30 May 2024
bGruGru1.hap1.cur.20240530.fasta.gz (370.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 8.64 Mbp 1 224.75 Mbp
20 36 6.35 Mbp 2 170.94 Mbp
30 61 5.30 Mbp 3 127.30 Mbp
40 93 3.99 Mbp 4 89.82 Mbp
50 137 2.95 Mbp 6 72.02 Mbp
60 195 2.20 Mbp 9 38.18 Mbp
70 277 1.46 Mbp 15 22.08 Mbp
80 412 0.84 Mbp 25 9.38 Mbp
90 923 69.00 Kbp 344 72.16 Kbp
100 0 0
0.910x 1347 1.35 Gbp 754 1.35 Gbp
NG based on genome size 1.49 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 30 May 2024
bGruGru1.hap2.cur.20240530.fasta.gz (362.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 9.65 Mbp 1 223.87 Mbp
20 32 6.95 Mbp 2 170.34 Mbp
30 56 5.35 Mbp 3 127.42 Mbp
40 89 3.99 Mbp 4 88.98 Mbp
50 132 3.00 Mbp 6 71.97 Mbp
60 189 2.24 Mbp 10 30.48 Mbp
70 267 1.52 Mbp 15 22.28 Mbp
80 407 0.76 Mbp 26 9.14 Mbp
90 0 0
100 0 0
0.868x 885 1.29 Gbp 326 1.29 Gbp
NG based on genome size 1.49 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
bGruGru1.MT.20240308.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.