Gulosus aristotelis

European shag

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bGulAri2: GCA_949628215.1 bGulAri2: GCA_949628205.1
ENA bGulAri2: GCA_949628215.1 bGulAri2: GCA_949628205.1
UCSC Genome Browser bGulAri2: GCA_949628215.1 bGulAri2: GCA_949628205.1

metadata.yaml (view) (edit on github)
species:
  short_name: bGulAri
  name: Gulosus aristotelis
  taxon_id: 126867
  common_name: European shag
  order:
    name: Pelecaniformes
  family:
    name: Phalacrocoracidae
  individuals:
    - short_name: bGulAri2
      biosample_id: SAMEA10059652
      sex: female
  genome_size: 1398540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bGulAri2 49.78 Gbp 35.59x 30.0 GiB
Arima bGulAri2 84.72 Gbp 60.58x 25.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bGulAri2 PacBio HiFi (.bam) 49.78 Gbp 35.59x 30.0 GiB
Arima 84.72 Gbp 60.58x 25.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 10 March 2023
bGulAri2.pri.cur.20230310.fasta.gz (366.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 26.39 Mbp 0 219.24 Mbp
20 10 20.03 Mbp 1 168.56 Mbp
30 17 17.00 Mbp 2 131.34 Mbp
40 26 13.73 Mbp 3 84.76 Mbp
50 38 10.82 Mbp 5 71.72 Mbp
60 53 8.36 Mbp 7 55.81 Mbp
70 72 6.04 Mbp 10 31.35 Mbp
80 107 2.90 Mbp 16 17.37 Mbp
90 269 202.31 Kbp 82 292.31 Kbp
100 0 0
0.915x 575 1.28 Gbp 353 1.28 Gbp
NG based on genome size 1.40 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 10 March 2023
bGulAri2.alt.cur.20230310.fasta.gz (311.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 205 490.36 Kbp 205 490.36 Kbp
20 562 326.46 Kbp 562 326.46 Kbp
30 1061 243.53 Kbp 1061 243.53 Kbp
40 1727 183.60 Kbp 1727 183.60 Kbp
50 2623 131.70 Kbp 2623 131.70 Kbp
60 3942 84.47 Kbp 3942 84.47 Kbp
70 6259 41.99 Kbp 6259 41.99 Kbp
80 0 0
90 0 0
100 0 0
0.773x 9752 1.08 Gbp 9751 1.08 Gbp
NG based on genome size 1.40 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.