Gypaetus barbatus

lammergeier

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bGypBar2: GCA_028022735.1 bGypBar2: GCA_028017155.1
ENA bGypBar2: GCA_028022735.1 bGypBar2: GCA_028017155.1
UCSC Genome Browser bGypBar2: GCA_028022735.1 bGypBar2: GCA_028017155.1

metadata.yaml (view) (edit on github)
species:
  name: Gypaetus barbatus
  individuals:
  - short_name: bGypBar2
  short_name: bGypBar
  taxon_id: '33610'
  common_name: lammergeier
  genome_size: 1434000000
  genome_size_method: GoAT
  order:
    name: Falconiformes
  family:
    name: Accipitridae
  project: [ vgp ]
CC BY-SA 2.5 Richard Bartz (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bGypBar2 198.51 Gbp 138.43x 445.6 GiB
PacBio HiFi (.fq) bGypBar2 39.17 Gbp 27.32x 32.6 GiB
Bionano bGypBar2 N/A 439.54x 1.1 GiB
Arima bGypBar2 188.97 Gbp 131.78x 93.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bGypBar2 PacBio HiFi (subreads) 198.51 Gbp 138.43x 445.6 GiB
PacBio HiFi (.fq) 39.17 Gbp 27.32x 32.6 GiB
Bionano N/A 439.54x 1.1 GiB
Arima 188.97 Gbp 131.78x 93.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 17 December 2021
bGypBar2.pri.cur.20211217.fasta.gz (372.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 36.64 Mbp 1 91.45 Mbp
20 7 31.50 Mbp 3 80.04 Mbp
30 11 28.51 Mbp 5 67.95 Mbp
40 17 20.24 Mbp 7 59.84 Mbp
50 25 17.62 Mbp 9 52.19 Mbp
60 35 12.49 Mbp 12 49.14 Mbp
70 48 9.08 Mbp 15 44.86 Mbp
80 69 5.06 Mbp 19 33.76 Mbp
90 132 1.02 Mbp 24 22.57 Mbp
100 0 0
0.951x 491 1.36 Gbp 232 1.37 Gbp
NG based on genome size 1.43 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 17 December 2021
bGypBar2.alt.cur.20211217.fasta.gz (536.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 41 2.78 Mbp 41 2.78 Mbp
20 99 2.17 Mbp 99 2.17 Mbp
30 175 1.64 Mbp 175 1.64 Mbp
40 270 1.37 Mbp 270 1.37 Mbp
50 384 1.16 Mbp 384 1.16 Mbp
60 521 0.97 Mbp 521 0.97 Mbp
70 685 0.80 Mbp 685 0.80 Mbp
80 881 0.67 Mbp 881 0.67 Mbp
90 1119 0.54 Mbp 1119 0.54 Mbp
100 1425 403.17 Kbp 1425 403.17 Kbp
1.318x 6275 1.89 Gbp 6275 1.89 Gbp
NG based on genome size 1.43 Gbp.
Assembly Metadata
assembly_vgp_standard_2.0/bGypBar2.yaml (view)
species: Gypaetus barbatus 
specimen:  bGypBar2 
projects:  
  -vgp 
  -cbp 
primary: s3://genomeark/species/Gypaetus_barbatus/bGypBar2/assembly_vgp_standard_2.0/bGypBar2.pri.asm.20211119.fasta 
haplotigs: s3://genomeark/species/Gypaetus_barbatus/bGypBar2/assembly_vgp_standard_2.0/bGypBar2.alt.asm.20211119.fasta 
hic_bam: s3://genomeark/species/Gypaetus00_barbatus/bGypBar2/ 
pretext: s3://genomeark/species/Gypaetus_barbatus/bGypBar2/ 
kmer_spectra_img: s3://genomeark/species/Gypaetus_barbatus/bGypBar2/ 
pipeline:  
 -hifiasm (0.15.4)  
 -purge_dups (1.2.5)  
 -bionano_solve (3.6.1)  
 -salsa (2.3)  
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.