Haliaeetus albicilla

white-tailed eagle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bHalAlb1: GCA_947461875.1 bHalAlb1: GCA_947461935.1
ENA bHalAlb1: GCA_947461875.1 bHalAlb1: GCA_947461935.1
UCSC Genome Browser bHalAlb1: GCA_947461875.1 bHalAlb1: GCA_947461935.1

metadata.yaml (view) (edit on github)
species:
  short_name: bHalAlb
  name: Haliaeetus albicilla
  taxon_id: 8969
  common_name: white-tailed eagle
  order:
    name: Accipitriformes
  family:
    name: Accipitridae
  individuals:
    - short_name: bHalAlb1
      biosample_id: SAMEA12857288
      sex: female
  genome_size: 1398540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bHalAlb1 62.84 Gbp 44.93x 40.8 GiB
Arima bHalAlb1 89.34 Gbp 63.88x 28.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bHalAlb1 PacBio HiFi (.bam) 62.84 Gbp 44.93x 40.8 GiB
Arima 89.34 Gbp 63.88x 28.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 February 2023
bHalAlb1.pri.cur.20230214.fasta.gz (371.7 MiB)

Quality: 0.1 errors/Mb (QV=68.39)

Contigs Scaffolds
NG LG Len LG Len
10 10 10.88 Mbp 1 81.10 Mbp
20 24 8.98 Mbp 3 72.79 Mbp
30 41 7.23 Mbp 5 51.30 Mbp
40 64 5.42 Mbp 8 46.38 Mbp
50 93 4.22 Mbp 12 43.69 Mbp
60 129 3.50 Mbp 15 38.79 Mbp
70 177 2.51 Mbp 19 31.05 Mbp
80 242 1.74 Mbp 24 26.49 Mbp
90 363 0.67 Mbp 30 7.26 Mbp
100 0 0
0.944x 612 1.32 Gbp 188 1.32 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 February 2023
bHalAlb1.alt.cur.20230214.fasta.gz (194.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 120 0.75 Mbp 120 0.75 Mbp
20 376 413.24 Kbp 376 413.24 Kbp
30 839 228.15 Kbp 839 228.15 Kbp
40 1775 91.64 Kbp 1775 91.64 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.496x 4971 0.69 Gbp 4971 0.69 Gbp
NG based on genome size 1.40 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.