Homo sapiens
human
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Maternal Assembly | Paternal Assembly |
---|---|---|
GenBank | mHomSap3: GCA_016695395.2 | mHomSap3: GCA_016700455.2 |
ENA | mHomSap3: GCA_016695395.2 | mHomSap3: GCA_016700455.2 |
UCSC Genome Browser | mHomSap3: GCA_016695395.2 | mHomSap3: GCA_016700455.2 |
metadata.yaml (view) (edit on github) |
---|
public domain
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 3.20 Gbp.
Last upload on 4 May 2022.
Coverage based on genome size 3.20 Gbp.
Last upload on 4 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 3.20 Gbp.
Last upload on 4 May 2022.
Coverage based on genome size 3.20 Gbp.
Last upload on 4 May 2022.
Assemblies
Individual 3 Maternal Assembly
Version assembly_curated from 16 July 2020
mHomSap3.mat.cur.20200716.fasta.gz (826.5 MiB)
Quality: 51.1 errors/Mb (QV=42.92)
Version assembly_curated from 16 July 2020
mHomSap3.mat.cur.20200716.fasta.gz (826.5 MiB)
Quality: 51.1 errors/Mb (QV=42.92)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 38.84 Mbp | 1 | 222.62 Mbp |
20 | 17 | 26.64 Mbp | 2 | 195.44 Mbp |
30 | 31 | 18.36 Mbp | 4 | 177.04 Mbp |
40 | 51 | 14.19 Mbp | 6 | 155.51 Mbp |
50 | 77 | 10.21 Mbp | 8 | 142.34 Mbp |
60 | 113 | 7.78 Mbp | 11 | 129.95 Mbp |
70 | 166 | 4.76 Mbp | 14 | 87.69 Mbp |
80 | 274 | 1.78 Mbp | 17 | 78.23 Mbp |
90 | 1702 | 42.83 Kbp | 368 | 62.34 Kbp |
100 | 0 | 0 | ||
0.904x | 2166 | 2.89 Gbp | 949 | 2.90 Gbp |
NG based on genome size 3.20 Gbp.
Individual 3 Paternal Assembly
Version assembly_curated from 16 July 2020
mHomSap3.pat.cur.20200716.fasta.gz (786.0 MiB)
Quality: 56.7 errors/Mb (QV=42.46)
Version assembly_curated from 16 July 2020
mHomSap3.pat.cur.20200716.fasta.gz (786.0 MiB)
Quality: 56.7 errors/Mb (QV=42.46)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 33.49 Mbp | 1 | 223.18 Mbp |
20 | 18 | 26.07 Mbp | 2 | 196.00 Mbp |
30 | 32 | 21.48 Mbp | 4 | 176.67 Mbp |
40 | 50 | 16.31 Mbp | 6 | 154.44 Mbp |
50 | 74 | 11.17 Mbp | 8 | 131.33 Mbp |
60 | 112 | 6.83 Mbp | 11 | 112.07 Mbp |
70 | 172 | 3.83 Mbp | 14 | 79.62 Mbp |
80 | 352 | 0.73 Mbp | 19 | 55.55 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.854x | 2166 | 2.73 Gbp | 994 | 2.74 Gbp |
NG based on genome size 3.20 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 August 2019
mHomSap3.MT.20190816.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 16 August 2019
mHomSap3.MT.20190816.fasta.gz (4.9 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.