Ia io

great evening bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mIaxIox
  name: Ia io
  taxon_id: 360967
  common_name: great evening bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mIaxIox1
  genome_size: 2288520000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mIaxIox2 82.50 Gbp 36.05x 71.2 GiB
PacBio HiFi (.bam) mIaxIox2 82.77 Gbp 36.17x 297.1 GiB
Arima mIaxIox2 157.03 Gbp 68.61x 64.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 18 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mIaxIox2 PacBio HiFi (.fq) 82.50 Gbp 36.05x 71.2 GiB
PacBio HiFi (.bam) 82.77 Gbp 36.17x 297.1 GiB
Arima 157.03 Gbp 68.61x 64.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 18 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 28 October 2025
mIaxIox2.hap1.cur.20251028.fasta.gz (635.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 68.69 Mbp 2 125.82 Mbp
20 7 59.18 Mbp 4 123.33 Mbp
30 11 50.52 Mbp 6 116.34 Mbp
40 17 36.04 Mbp 8 114.10 Mbp
50 25 22.96 Mbp 10 100.44 Mbp
60 36 18.61 Mbp 12 95.89 Mbp
70 51 10.86 Mbp 15 80.65 Mbp
80 81 5.52 Mbp 18 64.25 Mbp
90 143 2.31 Mbp 22 48.18 Mbp
100 460 148.86 Kbp 92 337.75 Kbp
1.010x 801 2.31 Gbp 377 2.31 Gbp
NG based on genome size 2.29 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 28 October 2025
mIaxIox2.hap2.cur.20251028.fasta.gz (532.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 63.86 Mbp 2 124.86 Mbp
20 8 47.85 Mbp 4 120.24 Mbp
30 13 42.64 Mbp 6 116.62 Mbp
40 19 34.82 Mbp 8 109.94 Mbp
50 26 26.14 Mbp 10 97.25 Mbp
60 37 17.39 Mbp 13 90.30 Mbp
70 56 9.19 Mbp 16 65.22 Mbp
80 98 3.79 Mbp 19 57.02 Mbp
90 239 0.63 Mbp 38 2.42 Mbp
100 0 0
0.929x 556 2.13 Gbp 196 2.13 Gbp
NG based on genome size 2.29 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2024
mIaxIox2.MT.20240226.fasta.gz (5.4 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mIaxIox2.yml (view)
species: Ia io 
specimen: mIaxIox2 
projects:  
  - vgp 
  - bat1k 
assembled_by_group: Rockefeller 
data_location: S3 
release_to: S3 
primary: s3://genomeark/species/Ia_io/mIaxIox2/assembly_vgp_HiC_2.0/mIaxIox2.HiC.hap1.20240226.fasta.gz 
haplotigs: s3://genomeark/species/Ia_io/mIaxIox2/assembly_vgp_HiC_2.0/mIaxIox2.HiC.hap2.20240226.fasta.gz 
pretext: s3://genomeark/species/Ia_io/mIaxIox2/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mIaxIox2_hap1_s2.pretext 
pretext: s3://genomeark/species/Ia_io/mIaxIox2/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mIaxIox2_hap2_s2.pretext 
kmer_spectra_img: s3://genomeark/species/Ia_io/mIaxIox2/assembly_vgp_HiC_2.0/evaluation/merqury/mIaxIox2_png/ 
pacbio_read_dir: s3://genomeark/species/Ia_io/mIaxIox2/genomic_data/pacbio_hifi/ 
pacbio_read_type: hifi 
hic_read_dir: s3://genomeark/species/Ia_io/mIaxIox2/genomic_data/arima/ 
mito: s3://genomeark/species/Ia_io/mIaxIox2/assembly_MT_rockefeller/mIaxIox2.MT.20240226.fasta.gz 
pipeline:  
  - hifiasm (0.19.8+galaxy0) 
  - yahs (1.2a.2+galaxy1) 
notes: This was a Hifiasm-HiC assembly of mIaxIox2. This hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Swift-IDT. The HiC reaction was using Arima kit 2. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.