Jaculus jaculus

lesser Egyptian jerboa

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank mJacJac1: GCA_020740715.1
ENA mJacJac1: GCA_020740715.1
UCSC Genome Browser mJacJac1: GCA_020740715.1

metadata.yaml (view) (edit on github)
species:
  short_name: mJacJac
  name: Jaculus jaculus
  taxon_id: 51337
  common_name: lesser Egyptian jerboa
  order:
    name: Rodentia
  family:
    name: Dipodidae
  individuals:
    - short_name: mJacJac1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mJacJac1 1323.56 Gbp N/A 2.3 TiB
10x mJacJac1 264.76 Gbp N/A 127.3 GiB
Bionano mJacJac1 N/A N/A 1.5 GiB
Arima mJacJac1 194.36 Gbp N/A 108.9 GiB
Illumina mJacJac2 223.29 Gbp N/A 100.9 GiB
mJacJac3 115.88 Gbp N/A 66.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 15 February 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mJacJac1 PacBio CLR 1323.56 Gbp N/A 2.3 TiB
10x 264.76 Gbp N/A 127.3 GiB
Bionano N/A N/A 1.5 GiB
Arima 194.36 Gbp N/A 108.9 GiB
mJacJac2 Illumina 223.29 Gbp N/A 100.9 GiB
mJacJac3 Illumina 115.88 Gbp N/A 66.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 15 February 2021.
Assemblies
Individual 1 Merged Trio Assembly
Version assembly_curated from 7 May 2021
mJacJac1.mat.Y.cur.20210507.fasta.gz (818.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 57.15 Mbp 0 344.07 Mbp
20 10 42.04 Mbp 2 190.63 Mbp
30 17 34.32 Mbp 3 180.76 Mbp
40 27 27.28 Mbp 5 167.30 Mbp
50 39 21.93 Mbp 6 158.24 Mbp
60 53 17.33 Mbp 8 142.03 Mbp
70 73 11.50 Mbp 11 113.41 Mbp
80 106 6.69 Mbp 13 94.33 Mbp
90 166 3.32 Mbp 17 69.84 Mbp
100 719 210 bp 158 724 bp
1.000x 720 2.85 Gbp 159 2.86 Gbp
NG based on genome size .
Individual 1 Maternal Assembly
Version assembly_curated from 7 May 2021
mJacJac1.mat.decon.20210507.fasta.gz (818.2 MiB)

Quality: 13.1 errors/Mb (QV=48.82)

Contigs Scaffolds
NG LG Len LG Len
10 4 57.15 Mbp 0 343.71 Mbp
20 10 42.04 Mbp 2 181.03 Mbp
30 17 34.32 Mbp 3 167.58 Mbp
40 27 27.28 Mbp 5 154.13 Mbp
50 39 21.93 Mbp 7 117.24 Mbp
60 53 17.33 Mbp 10 103.98 Mbp
70 73 11.50 Mbp 13 78.20 Mbp
80 106 6.69 Mbp 17 72.29 Mbp
90 165 3.32 Mbp 21 61.29 Mbp
100 751 5 bp 231 724 bp
1.000x 752 2.85 Gbp 232 2.86 Gbp
NG based on genome size .
Individual 1 Paternal Assembly
Version assembly_curated from 7 May 2021
mJacJac1.pat.decon.20210507.fasta.gz (687.0 MiB)

Quality: 20.3 errors/Mb (QV=46.93)

Contigs Scaffolds
NG LG Len LG Len
10 4 38.04 Mbp 1 197.58 Mbp
20 13 23.94 Mbp 2 176.27 Mbp
30 24 16.87 Mbp 4 162.29 Mbp
40 42 10.42 Mbp 5 149.00 Mbp
50 73 6.46 Mbp 7 117.19 Mbp
60 122 3.69 Mbp 10 94.10 Mbp
70 224 1.44 Mbp 13 68.97 Mbp
80 536 0.51 Mbp 17 53.65 Mbp
90 1236 248.12 Kbp 24 35.02 Mbp
100 3382 1 bp 507 2.00 Kbp
1.000x 3383 2.41 Gbp 508 2.60 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.