Lagenorhynchus acutus

Atlantic white-sided dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mLagAcu
  name: Lagenorhynchus acutus
  taxon_id: 90246
  common_name: Atlantic white-sided dolphin
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mLagAcu1
      biosample_id: SAMEA114493133
      sex: male
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mLagAcu1 143.50 Gbp 46.58x 43.8 GiB
Arima mLagAcu1 461.40 Gbp 149.77x 124.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 10 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLagAcu1 PacBio HiFi (.bam) 143.50 Gbp 46.58x 43.8 GiB
Arima 461.40 Gbp 149.77x 124.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 10 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 27 September 2024
mLagAcu1.hap1.cur.20240927.fasta.gz (734.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 8.52 Mbp 2 193.56 Mbp
20 71 6.13 Mbp 4 157.73 Mbp
30 129 4.67 Mbp 6 132.17 Mbp
40 202 3.82 Mbp 8 116.19 Mbp
50 293 2.99 Mbp 11 105.44 Mbp
60 415 2.18 Mbp 14 90.36 Mbp
70 586 1.45 Mbp 18 84.29 Mbp
80 883 0.69 Mbp 25 2.49 Mbp
90 0 0
100 0 0
0.869x 1933 2.68 Gbp 899 2.68 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 27 September 2024
mLagAcu1.hap2.cur.20240927.fasta.gz (676.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 8.32 Mbp 2 177.15 Mbp
20 73 5.84 Mbp 4 145.25 Mbp
30 133 4.47 Mbp 6 116.60 Mbp
40 210 3.51 Mbp 9 105.94 Mbp
50 310 2.63 Mbp 12 90.43 Mbp
60 452 1.80 Mbp 16 86.73 Mbp
70 691 0.89 Mbp 20 60.54 Mbp
80 0 0
90 0 0
100 0 0
0.786x 1796 2.42 Gbp 879 2.42 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 July 2024
mLagAcu1.MT.20240707.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.