Larus fuscus
Lesser black-backed gull
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bLarFus1 | 58.32 Gbp | 40.70x | 32.3 GiB | |
Arima | bLarFus1 | 76.24 Gbp | 53.21x | 22.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 8 February 2024.
Coverage based on genome size 1.43 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bLarFus1 | PacBio HiFi (.bam) | 58.32 Gbp | 40.70x | 32.3 GiB | |
Arima | 76.24 Gbp | 53.21x | 22.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 8 February 2024.
Coverage based on genome size 1.43 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 February 2024
bLarFus1.pri.cur.20240203.fasta.gz (363.0 MiB)
Quality: not computed
Version assembly_curated from 3 February 2024
bLarFus1.pri.cur.20240203.fasta.gz (363.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 9.09 Mbp | 1 | 218.47 Mbp |
20 | 30 | 6.85 Mbp | 2 | 167.92 Mbp |
30 | 53 | 5.45 Mbp | 3 | 128.68 Mbp |
40 | 83 | 4.21 Mbp | 4 | 94.81 Mbp |
50 | 122 | 3.24 Mbp | 6 | 83.13 Mbp |
60 | 172 | 2.47 Mbp | 8 | 58.10 Mbp |
70 | 239 | 1.81 Mbp | 10 | 49.40 Mbp |
80 | 354 | 0.74 Mbp | 18 | 9.36 Mbp |
90 | 1000 | 82.00 Kbp | 491 | 88.71 Kbp |
100 | 0 | 0 | ||
0.924x | 1904 | 1.32 Gbp | 1367 | 1.32 Gbp |
NG based on genome size 1.43 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 3 February 2024
bLarFus1.alt.cur.20240203.fasta.gz (366.1 MiB)
Quality: not computed
Version assembly_curated from 3 February 2024
bLarFus1.alt.cur.20240203.fasta.gz (366.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 58 | 1.99 Mbp | 58 | 1.99 Mbp |
20 | 141 | 1.53 Mbp | 141 | 1.53 Mbp |
30 | 248 | 1.17 Mbp | 248 | 1.17 Mbp |
40 | 390 | 0.90 Mbp | 390 | 0.90 Mbp |
50 | 575 | 0.68 Mbp | 575 | 0.68 Mbp |
60 | 822 | 497.59 Kbp | 822 | 497.59 Kbp |
70 | 1184 | 309.92 Kbp | 1184 | 309.92 Kbp |
80 | 1869 | 135.65 Kbp | 1869 | 135.65 Kbp |
90 | 4141 | 31.35 Kbp | 4141 | 31.35 Kbp |
100 | 0 | 0 | ||
0.941x | 7404 | 1.35 Gbp | 7404 | 1.35 Gbp |
NG based on genome size 1.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 December 2023
bLarFus1.MT.20231223.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 23 December 2023
bLarFus1.MT.20231223.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.