Larus occidentalis

Western Gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarOcc
  name: Larus occidentalis
  taxon_id: 126713
  common_name: Western Gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarOcc1
      biosample_id: SAMEA115348658
      sex: female
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarOcc1 94.34 Gbp 65.84x 31.5 GiB
Arima bLarOcc1 84.53 Gbp 59.00x 23.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 1 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarOcc1 PacBio HiFi (.bam) 94.34 Gbp 65.84x 31.5 GiB
Arima 84.53 Gbp 59.00x 23.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 1 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 31 July 2025
bLarOcc1.hap1.cur.20250731.fasta.gz (380.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 12.10 Mbp 1 221.87 Mbp
20 24 8.67 Mbp 2 171.42 Mbp
30 43 6.50 Mbp 3 128.25 Mbp
40 68 5.00 Mbp 4 98.36 Mbp
50 101 3.79 Mbp 6 85.63 Mbp
60 142 3.13 Mbp 7 74.23 Mbp
70 194 2.46 Mbp 10 51.97 Mbp
80 264 1.68 Mbp 14 20.13 Mbp
90 371 0.99 Mbp 30 2.93 Mbp
100 754 80.10 Kbp 239 129.75 Kbp
1.007x 1007 1.44 Gbp 454 1.44 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 31 July 2025
bLarOcc1.hap2.cur.20250731.fasta.gz (338.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 11.23 Mbp 1 221.26 Mbp
20 26 6.87 Mbp 2 172.19 Mbp
30 49 5.73 Mbp 3 129.31 Mbp
40 78 4.42 Mbp 4 97.58 Mbp
50 116 3.29 Mbp 6 73.02 Mbp
60 167 2.42 Mbp 8 58.93 Mbp
70 237 1.66 Mbp 11 25.20 Mbp
80 359 0.78 Mbp 26 2.90 Mbp
90 0 0
100 0 0
0.860x 868 1.23 Gbp 386 1.23 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 July 2024
bLarOcc1.MT.20240720.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.