Lemur catta

ring-tailed lemur

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mLemCat1: GCA_020740605.1 mLemCat1: GCA_020740595.1
ENA mLemCat1: GCA_020740605.1 mLemCat1: GCA_020740595.1
UCSC Genome Browser mLemCat1: GCA_020740605.1 mLemCat1: GCA_020740595.1

metadata.yaml (view) (edit on github)
species:
  common_name: ring-tailed lemur
  family:
    name: Lemuridae
  genome_size: 3300000000
  genome_size_method: null
  individuals:
  - short_name: mLemCat1
  name: Lemur catta
  order:
    name: Lemuriformes
  short_name: mLemCat
  taxon_id: 9447
  project: [ vgp ]
(pixabay)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mLemCat1 201.23 Gbp 60.98x 348.8 GiB
PacBio HiFi (subreads) mLemCat1 1195.62 Gbp 362.31x 2.1 TiB
PacBio HiFi (.bam) mLemCat1 68.69 Gbp 20.82x 56.5 GiB
10x mLemCat1 278.88 Gbp 84.51x 130.7 GiB
Bionano mLemCat1 N/A 150.35x 1.0 GiB
Arima mLemCat1 212.44 Gbp 64.38x 130.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLemCat1 PacBio CLR 201.23 Gbp 60.98x 348.8 GiB
PacBio HiFi (subreads) 1195.62 Gbp 362.31x 2.1 TiB
PacBio HiFi (.bam) 68.69 Gbp 20.82x 56.5 GiB
10x 278.88 Gbp 84.51x 130.7 GiB
Bionano N/A 150.35x 1.0 GiB
Arima 212.44 Gbp 64.38x 130.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 July 2021
mLemCat1.pri.cur.20210716.fasta.gz (629.2 MiB)

Quality: 5.1 errors/Mb (QV=52.95)

Contigs Scaffolds
NG LG Len LG Len
10 3 79.53 Mbp 1 147.49 Mbp
20 8 54.57 Mbp 3 117.45 Mbp
30 16 38.42 Mbp 6 108.75 Mbp
40 26 27.68 Mbp 10 99.28 Mbp
50 43 16.15 Mbp 13 73.53 Mbp
60 77 5.75 Mbp 19 37.49 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.679x 394 2.24 Gbp 184 2.25 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 July 2021
mLemCat1.alt.cur.20210716.fasta.gz (634.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 96.00 Mbp 3 96.00 Mbp
20 7 56.18 Mbp 7 56.18 Mbp
30 13 45.82 Mbp 13 45.82 Mbp
40 23 30.76 Mbp 23 30.76 Mbp
50 35 20.47 Mbp 35 20.47 Mbp
60 58 9.29 Mbp 58 9.29 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.687x 313 2.27 Gbp 312 2.27 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mLemCat1.MT.20190820.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.