Lipophrys pholis

shanny

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fLipPho2: GCA_963383615.1 fLipPho2: GCA_963383635.1
ENA fLipPho2: GCA_963383615.1 fLipPho2: GCA_963383635.1
UCSC Genome Browser fLipPho2: GCA_963383615.1 fLipPho2: GCA_963383635.1

metadata.yaml (view) (edit on github)
species:
  short_name: fLipPho
  name: Lipophrys pholis
  taxon_id: 56720
  common_name: shanny
  order:
    name: Blenniiformes
  family:
    name: Blenniidae
  individuals:
    - short_name: fLipPho2
      biosample_id: SAMEA7522844
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Gilles San Martin (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLipPho2 30.17 Gbp 39.98x 20.2 GiB
10x fLipPho2 68.48 Gbp 90.73x 38.9 GiB
Arima fLipPho2 129.28 Gbp 171.28x 77.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.75 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLipPho2 PacBio HiFi (.bam) 30.17 Gbp 39.98x 20.2 GiB
10x 68.48 Gbp 90.73x 38.9 GiB
Arima 129.28 Gbp 171.28x 77.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.75 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 26 June 2026
fLipPho2.pri.cur.20260626.fasta.gz (213.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 8.13 Mbp 2 40.26 Mbp
20 17 6.36 Mbp 4 35.92 Mbp
30 30 5.24 Mbp 6 34.65 Mbp
40 46 4.28 Mbp 8 33.48 Mbp
50 66 3.36 Mbp 11 31.91 Mbp
60 91 2.70 Mbp 13 29.81 Mbp
70 125 1.84 Mbp 16 29.03 Mbp
80 178 1.13 Mbp 18 27.00 Mbp
90 288 419.54 Kbp 21 25.21 Mbp
100 1144 1.00 Kbp 546 1.00 Kbp
1.000x 1144 0.75 Gbp 546 0.75 Gbp
NG based on genome size 0.75 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 26 June 2026
fLipPho2.alt.cur.20260626.fasta.gz (209.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 38 1.36 Mbp 38 1.36 Mbp
20 101 1.01 Mbp 101 1.01 Mbp
30 187 0.75 Mbp 187 0.75 Mbp
40 300 0.57 Mbp 299 0.58 Mbp
50 445 453.92 Kbp 444 454.01 Kbp
60 632 340.29 Kbp 631 340.29 Kbp
70 883 251.19 Kbp 882 251.19 Kbp
80 1246 161.17 Kbp 1245 161.17 Kbp
90 1872 81.76 Kbp 1871 81.76 Kbp
100 3847 3.83 Kbp 3846 3.83 Kbp
1.000x 3847 0.74 Gbp 3846 0.74 Gbp
NG based on genome size 0.75 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 August 2023
fLipPho2.MT.20230804.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.