Lipophrys pholis
shanny
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Gilles San Martin (wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fLipPho2 | 30.17 Gbp | 39.27x | 20.2 GiB | |
10x | fLipPho2 | 68.48 Gbp | 89.14x | 38.9 GiB | |
Arima | fLipPho2 | 129.28 Gbp | 168.28x | 77.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.77 Gbp.
Last upload on 8 August 2023.
Coverage based on genome size 0.77 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fLipPho2 | PacBio HiFi (.bam) | 30.17 Gbp | 39.27x | 20.2 GiB | |
10x | 68.48 Gbp | 89.14x | 38.9 GiB | ||
Arima | 129.28 Gbp | 168.28x | 77.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.77 Gbp.
Last upload on 8 August 2023.
Coverage based on genome size 0.77 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 22 August 2023
fLipPho2.pri.cur.20230822.fasta.gz (217.0 MiB)
Quality: not computed
Version assembly_curated from 22 August 2023
fLipPho2.pri.cur.20230822.fasta.gz (217.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 8.13 Mbp | 2 | 40.26 Mbp |
20 | 17 | 6.36 Mbp | 4 | 35.92 Mbp |
30 | 31 | 5.17 Mbp | 6 | 34.65 Mbp |
40 | 47 | 4.26 Mbp | 9 | 32.54 Mbp |
50 | 68 | 3.30 Mbp | 11 | 31.91 Mbp |
60 | 94 | 2.65 Mbp | 13 | 29.81 Mbp |
70 | 130 | 1.79 Mbp | 16 | 29.03 Mbp |
80 | 188 | 1.03 Mbp | 19 | 26.54 Mbp |
90 | 320 | 346.51 Kbp | 22 | 21.38 Mbp |
100 | 1445 | 1.00 Kbp | 847 | 1.00 Kbp |
1.000x | 1445 | 0.77 Gbp | 847 | 0.77 Gbp |
NG based on genome size 0.77 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 22 August 2023
fLipPho2.alt.cur.20230822.fasta.gz (209.8 MiB)
Quality: not computed
Version assembly_curated from 22 August 2023
fLipPho2.alt.cur.20230822.fasta.gz (209.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 38 | 1.36 Mbp | 38 | 1.36 Mbp |
20 | 101 | 1.01 Mbp | 101 | 1.01 Mbp |
30 | 187 | 0.75 Mbp | 187 | 0.75 Mbp |
40 | 300 | 0.57 Mbp | 299 | 0.58 Mbp |
50 | 445 | 453.92 Kbp | 444 | 454.01 Kbp |
60 | 632 | 340.29 Kbp | 631 | 340.29 Kbp |
70 | 883 | 251.19 Kbp | 882 | 251.19 Kbp |
80 | 1246 | 161.17 Kbp | 1245 | 161.17 Kbp |
90 | 1872 | 81.76 Kbp | 1871 | 81.76 Kbp |
100 | 3847 | 3.83 Kbp | 3846 | 3.83 Kbp |
1.000x | 3847 | 0.74 Gbp | 3846 | 0.74 Gbp |
NG based on genome size 0.77 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 August 2023
fLipPho2.MT.20230804.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 4 August 2023
fLipPho2.MT.20230804.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.