Malaclemys terrapin
diamondback terrapin
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | rMalTer1: GCA_027887155.1 rMalTer1: GCA_027887205.1 | |
ENA | rMalTer1: GCA_027887155.1 rMalTer1: GCA_027887205.1 | |
UCSC Genome Browser | rMalTer1: GCA_027887155.1 rMalTer1: GCA_027887205.1 |
metadata.yaml (view) (edit on github) |
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CC BY 2.5 J.D. Wilson (Wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | rMalTer1 | 80.79 Gbp | 30.26x | 63.0 GiB | |
Bionano | rMalTer1 | N/A | 833.79x | 3.6 GiB | |
Arima | rMalTer1 | 184.19 Gbp | 68.98x | 94.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.67 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 2.67 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
rMalTer1 | PacBio HiFi (.fq) | 80.79 Gbp | 30.26x | 63.0 GiB | |
Bionano | N/A | 833.79x | 3.6 GiB | ||
Arima | 184.19 Gbp | 68.98x | 94.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.67 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 2.67 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 8 July 2022
rMalTer1.hap1.cur.20220708.fasta.gz (646.5 MiB)
Quality: 0.2 errors/Mb (QV=67.68)
Version assembly_curated from 8 July 2022
rMalTer1.hap1.cur.20220708.fasta.gz (646.5 MiB)
Quality: 0.2 errors/Mb (QV=67.68)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 133.80 Mbp | 0 | 356.04 Mbp |
20 | 4 | 108.60 Mbp | 1 | 287.94 Mbp |
30 | 6 | 94.60 Mbp | 2 | 209.48 Mbp |
40 | 10 | 75.59 Mbp | 4 | 144.57 Mbp |
50 | 14 | 52.97 Mbp | 6 | 128.56 Mbp |
60 | 20 | 37.20 Mbp | 8 | 106.34 Mbp |
70 | 29 | 22.09 Mbp | 12 | 46.69 Mbp |
80 | 59 | 3.22 Mbp | 21 | 20.00 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.828x | 217 | 2.21 Gbp | 76 | 2.21 Gbp |
NG based on genome size 2.67 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 8 July 2022
rMalTer1.hap2.cur.20220708.fasta.gz (647.4 MiB)
Quality: 0.2 errors/Mb (QV=67.80)
Version assembly_curated from 8 July 2022
rMalTer1.hap2.cur.20220708.fasta.gz (647.4 MiB)
Quality: 0.2 errors/Mb (QV=67.80)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 182.37 Mbp | 0 | 356.04 Mbp |
20 | 3 | 134.96 Mbp | 1 | 287.23 Mbp |
30 | 5 | 120.02 Mbp | 2 | 209.33 Mbp |
40 | 7 | 97.70 Mbp | 4 | 143.97 Mbp |
50 | 10 | 78.53 Mbp | 6 | 128.41 Mbp |
60 | 15 | 44.68 Mbp | 8 | 105.66 Mbp |
70 | 22 | 21.36 Mbp | 12 | 48.33 Mbp |
80 | 47 | 3.75 Mbp | 21 | 20.68 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.829x | 186 | 2.21 Gbp | 59 | 2.21 Gbp |
NG based on genome size 2.67 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.