Melanostigma gelatinosum

limp eelpout

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fMelGel1: GCA_949748355.1 fMelGel1: GCA_949748265.1
ENA fMelGel1: GCA_949748355.1 fMelGel1: GCA_949748265.1
UCSC Genome Browser fMelGel1: GCA_949748355.1 fMelGel1: GCA_949748265.1

metadata.yaml (view) (edit on github)
species:
  short_name: fMelGel
  name: Melanostigma gelatinosum
  taxon_id: 1091424
  common_name: limp eelpout
  order:
    name: Perciformes
  family:
    name: Zoarcidae
  individuals:
    - short_name: fMelGel1
      biosample_id: SAMEA12815492
      sex:
  genome_size: 899760000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fMelGel1 25.54 Gbp 28.38x 89.4 GiB
Arima fMelGel1 110.23 Gbp 122.51x 33.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.90 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMelGel1 PacBio HiFi (.bam) 25.54 Gbp 28.38x 89.4 GiB
Arima 110.23 Gbp 122.51x 33.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.90 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 March 2023
fMelGel1.pri.cur.20230321.fasta.gz (177.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 4.23 Mbp 2 31.72 Mbp
20 41 3.14 Mbp 5 29.54 Mbp
30 74 2.41 Mbp 8 28.67 Mbp
40 118 1.81 Mbp 11 27.81 Mbp
50 177 1.21 Mbp 15 25.00 Mbp
60 275 0.68 Mbp 19 22.28 Mbp
70 526 160.29 Kbp 29 0.51 Mbp
80 0 0
90 0 0
100 0 0
0.736x 1123 0.66 Gbp 534 0.66 Gbp
NG based on genome size 0.90 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 March 2023
fMelGel1.alt.cur.20230321.fasta.gz (175.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 1.39 Mbp 49 1.39 Mbp
20 130 0.90 Mbp 130 0.90 Mbp
30 247 0.65 Mbp 247 0.65 Mbp
40 404 491.55 Kbp 404 491.55 Kbp
50 633 309.43 Kbp 633 309.43 Kbp
60 1035 161.73 Kbp 1034 162.49 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.700x 2700 0.63 Gbp 2698 0.63 Gbp
NG based on genome size 0.90 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.