Mesoplodon densirostris
Blainville's beaked whale
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mMesDen1: GCA_025265405.1 | mMesDen1: GCA_025094165.1 |
ENA | mMesDen1: GCA_025265405.1 | mMesDen1: GCA_025094165.1 |
UCSC Genome Browser | mMesDen1: GCA_025265405.1 | mMesDen1: GCA_025094165.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 MatthewGrammatico (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 3.38 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 3.38 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 3.38 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 3.38 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 March 2022
mMesDen1.pri.cur.20220330.fasta.gz (727.4 MiB)
Quality: 0.1 errors/Mb (QV=71.66)
Version assembly_curated from 30 March 2022
mMesDen1.pri.cur.20220330.fasta.gz (727.4 MiB)
Quality: 0.1 errors/Mb (QV=71.66)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 107.70 Mbp | 1 | 193.42 Mbp |
20 | 6 | 75.75 Mbp | 3 | 184.91 Mbp |
30 | 11 | 61.30 Mbp | 5 | 142.13 Mbp |
40 | 17 | 48.25 Mbp | 7 | 125.81 Mbp |
50 | 25 | 40.14 Mbp | 10 | 111.29 Mbp |
60 | 34 | 31.41 Mbp | 14 | 91.99 Mbp |
70 | 49 | 13.31 Mbp | 17 | 78.60 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.794x | 170 | 2.68 Gbp | 73 | 2.68 Gbp |
NG based on genome size 3.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 30 March 2022
mMesDen1.alt.cur.20220330.fasta.gz (646.0 MiB)
Quality: not computed
Version assembly_curated from 30 March 2022
mMesDen1.alt.cur.20220330.fasta.gz (646.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 72 | 3.54 Mbp | 72 | 3.54 Mbp |
20 | 192 | 2.35 Mbp | 192 | 2.35 Mbp |
30 | 362 | 1.67 Mbp | 362 | 1.67 Mbp |
40 | 604 | 1.17 Mbp | 604 | 1.17 Mbp |
50 | 958 | 0.78 Mbp | 958 | 0.78 Mbp |
60 | 1562 | 392.24 Kbp | 1562 | 392.24 Kbp |
70 | 4652 | 29.31 Kbp | 4651 | 29.35 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.704x | 5198 | 2.38 Gbp | 5197 | 2.38 Gbp |
NG based on genome size 3.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 17 June 2022
mMesDen1.MT.20220617.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 17 June 2022
mMesDen1.MT.20220617.fasta.gz (4.9 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.