Microcaecilia unicolor

tiny Cayenne caecilian

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank aMicUni1: GCA_901765095.2 aMicUni1: GCA_901765105.1
ENA aMicUni1: GCA_901765095.2 aMicUni1: GCA_901765105.1
UCSC Genome Browser aMicUni1: GCA_901765095.2 aMicUni1: GCA_901765105.1

metadata.yaml (view) (edit on github)
species:
  short_name: aMicUni
  name: Microcaecilia unicolor
  taxon_id: 1415580
  common_name: tiny Cayenne caecilian
  order:
    name: Apoda
  family:
    name: Siphonopidae
  individuals:
    - short_name: aMicUni1
      biosample_id: SAMEA104387962
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
Copyright Mark Wilkinson, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR aMicUni1 252.24 Gbp 53.83x 440.9 GiB
10x aMicUni1 354.61 Gbp 75.68x 242.7 GiB
Bionano aMicUni1 N/A 476.20x 2.7 GiB
Arima aMicUni1 271.20 Gbp 57.87x 166.5 GiB
Dovetail Genomics aMicUni1 239.65 Gbp 51.14x 151.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.69 Gbp.
Last upload on 30 January 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aMicUni1 PacBio CLR 252.24 Gbp 53.83x 440.9 GiB
10x 354.61 Gbp 75.68x 242.7 GiB
Bionano N/A 476.20x 2.7 GiB
Arima 271.20 Gbp 57.87x 166.5 GiB
Dovetail Genomics 239.65 Gbp 51.14x 151.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.69 Gbp.
Last upload on 30 January 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
aMicUni1.pri.cur.20190523.fasta.gz (1.3 GiB)

Quality: 199.2 errors/Mb (QV=37.01)

Contigs Scaffolds
NG LG Len LG Len
10 35 9.77 Mbp 0 0.77 Gbp
20 89 7.37 Mbp 1 0.66 Gbp
30 161 5.60 Mbp 1 0.66 Gbp
40 253 4.64 Mbp 2 0.54 Gbp
50 366 3.65 Mbp 3 376.15 Mbp
60 509 2.89 Mbp 5 346.41 Mbp
70 693 2.18 Mbp 6 311.29 Mbp
80 952 1.46 Mbp 8 228.14 Mbp
90 1374 0.81 Mbp 10 208.48 Mbp
100 3531 221 bp 1079 2.05 Kbp
1.000x 3532 4.64 Gbp 1080 4.69 Gbp
NG based on genome size 4.69 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
aMicUni1.alt.cur.20190523.fasta.gz (1.1 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 462 0.61 Mbp 462 0.61 Mbp
20 1160 470.06 Kbp 1160 470.06 Kbp
30 2044 377.58 Kbp 2044 377.58 Kbp
40 3138 303.97 Kbp 3138 303.97 Kbp
50 4494 245.21 Kbp 4494 245.21 Kbp
60 6188 194.86 Kbp 6188 194.86 Kbp
70 8348 150.40 Kbp 8348 150.40 Kbp
80 11211 110.66 Kbp 11211 110.66 Kbp
90 15305 72.40 Kbp 15305 72.40 Kbp
100 23870 230 bp 23869 230 bp
1.000x 23871 3.70 Gbp 23870 3.70 Gbp
NG based on genome size 4.69 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aMicUni1.MT.20191003.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.