Microstomus kitt

lemon sole

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fMicKit
  name: Microstomus kitt
  taxon_id: 106175
  common_name: lemon sole
  order:
    name: Pleuronectiformes
  family:
    name: Pleuronectidae
  individuals:
    - short_name: fMicKit1
      biosample_id: SAMEA114298639
      sex:
  genome_size: 948660000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fMicKit1 40.23 Gbp 42.41x 11.2 GiB
Arima fMicKit1 184.18 Gbp 194.15x 28.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.95 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMicKit1 PacBio HiFi (.bam) 40.23 Gbp 42.41x 11.2 GiB
Arima 184.18 Gbp 194.15x 28.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.95 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 September 2024
fMicKit1.pri.cur.20240924.fasta.gz (191.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 6.01 Mbp 3 30.84 Mbp
20 34 4.19 Mbp 7 29.41 Mbp
30 60 3.09 Mbp 10 29.20 Mbp
40 96 2.22 Mbp 13 25.77 Mbp
50 147 1.52 Mbp 17 23.12 Mbp
60 235 0.77 Mbp 21 21.23 Mbp
70 481 172.71 Kbp 121 194.00 Kbp
80 0 0
90 0 0
100 0 0
0.793x 1990 0.75 Gbp 1581 0.75 Gbp
NG based on genome size 0.95 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 September 2024
fMicKit1.alt.cur.20240924.fasta.gz (239.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 2.35 Mbp 31 2.35 Mbp
20 78 1.69 Mbp 78 1.69 Mbp
30 146 1.18 Mbp 146 1.18 Mbp
40 242 0.84 Mbp 242 0.84 Mbp
50 375 0.61 Mbp 375 0.61 Mbp
60 573 386.65 Kbp 573 386.65 Kbp
70 894 221.37 Kbp 894 221.37 Kbp
80 1520 99.23 Kbp 1520 99.23 Kbp
90 3372 30.36 Kbp 3372 30.36 Kbp
100 0 0
0.978x 7487 0.93 Gbp 7487 0.93 Gbp
NG based on genome size 0.95 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 May 2024
fMicKit1.MT.20240523.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.