Mustela erminea

stoat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mMusErm1: GCA_009829155.1 mMusErm1: GCA_009829165.1
ENA mMusErm1: GCA_009829155.1 mMusErm1: GCA_009829165.1
UCSC Genome Browser mMusErm1: GCA_009829155.1 mMusErm1: GCA_009829165.1

metadata.yaml (view) (edit on github)
species:
  short_name: mMusErm
  name: Mustela erminea
  taxon_id: 36723
  common_name: stoat
  order:
    name: Carnivora
  family:
    name: Mustelidae
  individuals:
    - short_name: mMusErm1
    - short_name: mMusErm2
      biosample_id: SAMEA113398842
      sex: male
  genome_size: 3080000000
  genome_size_method: null
  project: [ vgp ]
Copyright Patrick Garvey, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mMusErm1 193.47 Gbp 62.82x 331.0 GiB
PacBio HiFi (.bam) mMusErm2 95.78 Gbp 31.10x 37.5 GiB
10x mMusErm1 306.79 Gbp 99.61x 146.5 GiB
Bionano mMusErm1 N/A 149.82x 819.2 MiB
Arima mMusErm1 459.92 Gbp 149.33x 292.2 GiB
mMusErm2 319.24 Gbp 103.65x 89.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 10 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMusErm1 PacBio CLR 193.47 Gbp 62.82x 331.0 GiB
10x 306.79 Gbp 99.61x 146.5 GiB
Bionano N/A 149.82x 819.2 MiB
Arima 459.92 Gbp 149.33x 292.2 GiB
mMusErm2 PacBio HiFi (.bam) 95.78 Gbp 31.10x 37.5 GiB
Arima 319.24 Gbp 103.65x 89.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 10 May 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 October 2019
mMusErm1.pri.cur.20191017.fasta.gz (706.2 MiB)

Quality: 17.8 errors/Mb (QV=47.51)

Contigs Scaffolds
NG LG Len LG Len
10 2 95.27 Mbp 1 165.68 Mbp
20 6 66.52 Mbp 3 151.34 Mbp
30 11 48.95 Mbp 5 145.11 Mbp
40 19 34.66 Mbp 7 130.15 Mbp
50 29 26.51 Mbp 10 109.75 Mbp
60 44 16.14 Mbp 13 92.90 Mbp
70 68 10.30 Mbp 16 85.47 Mbp
80 0 0
90 0 0
100 0 0
0.787x 292 2.42 Gbp 93 2.45 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 17 October 2019
mMusErm1.alt.cur.20191017.fasta.gz (482.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 121 1.91 Mbp 121 1.91 Mbp
20 322 1.30 Mbp 322 1.30 Mbp
30 614 0.87 Mbp 614 0.87 Mbp
40 1080 0.51 Mbp 1080 0.51 Mbp
50 2072 167.86 Kbp 2072 167.86 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.533x 3327 1.64 Gbp 3327 1.64 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mMusErm1.MT.20191003.fasta.gz (4.9 KiB)

Quality: not computed
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 2 October 2024
mMusErm2.hap1.asm.20241002.fasta.gz (847.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 79 3.17 Mbp 2 165.67 Mbp
20 192 2.37 Mbp 4 152.85 Mbp
30 337 1.90 Mbp 6 147.27 Mbp
40 519 1.53 Mbp 9 114.21 Mbp
50 741 1.25 Mbp 11 98.47 Mbp
60 1016 1.00 Mbp 15 89.55 Mbp
70 1368 0.77 Mbp 19 60.92 Mbp
80 1839 0.55 Mbp 30 6.11 Mbp
90 2577 302.09 Kbp 206 0.81 Mbp
100 0 0
0.983x 4753 3.03 Gbp 1695 3.03 Gbp
NG based on genome size 3.08 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 2 October 2024
mMusErm2.hap2.asm.20241002.fasta.gz (805.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 77 3.04 Mbp 2 165.54 Mbp
20 195 2.24 Mbp 4 152.40 Mbp
30 349 1.77 Mbp 6 146.26 Mbp
40 543 1.44 Mbp 8 114.37 Mbp
50 781 1.16 Mbp 11 106.33 Mbp
60 1087 0.89 Mbp 14 88.29 Mbp
70 1487 0.66 Mbp 19 60.60 Mbp
80 2056 433.90 Kbp 73 1.62 Mbp
90 3176 155.26 Kbp 564 258.20 Kbp
100 0 0
0.938x 5211 2.89 Gbp 2329 2.89 Gbp
NG based on genome size 3.08 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 October 2024
mMusErm2.MT.20241002.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.