Myotis nesopolus

Curaçao myotis

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMyoNes
  name: Myotis nesopolus
  taxon_id: 1163727
  common_name: Curaçao myotis
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoNes1
  genome_size: 2210280000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mMyoNes1 94.01 Gbp 42.53x 80.8 GiB
PacBio HiFi (.bam) mMyoNes1 94.27 Gbp 42.65x 338.1 GiB
Arima mMyoNes1 152.02 Gbp 68.78x 63.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 18 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoNes1 PacBio HiFi (.fq) 94.01 Gbp 42.53x 80.8 GiB
PacBio HiFi (.bam) 94.27 Gbp 42.65x 338.1 GiB
Arima 152.02 Gbp 68.78x 63.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.21 Gbp.
Last upload on 18 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 13 January 2026
mMyoNes1.hap1.cur.20260113.fasta.gz (626.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 113.85 Mbp 1 242.75 Mbp
20 4 96.13 Mbp 2 221.29 Mbp
30 7 74.05 Mbp 3 220.52 Mbp
40 10 62.40 Mbp 5 118.04 Mbp
50 14 49.12 Mbp 7 105.52 Mbp
60 19 45.57 Mbp 9 98.42 Mbp
70 24 36.74 Mbp 11 88.43 Mbp
80 32 19.95 Mbp 14 65.46 Mbp
90 57 5.54 Mbp 18 56.14 Mbp
100 193 422.90 Kbp 53 0.75 Mbp
1.012x 365 2.24 Gbp 192 2.24 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 13 January 2026
mMyoNes1.hap2.cur.20260113.fasta.gz (521.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 100.41 Mbp 1 242.77 Mbp
20 5 79.53 Mbp 2 218.60 Mbp
30 8 67.32 Mbp 3 218.11 Mbp
40 11 58.90 Mbp 5 111.22 Mbp
50 15 48.85 Mbp 7 100.29 Mbp
60 21 34.65 Mbp 10 85.85 Mbp
70 29 20.72 Mbp 13 65.04 Mbp
80 49 6.16 Mbp 16 57.48 Mbp
90 179 390.19 Kbp 41 0.81 Mbp
100 0 0
0.910x 324 2.01 Gbp 150 2.01 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 23 February 2024
mMyoNes1.MT.20240223.fasta.gz (5.4 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mMyoNes1.yml (view)
species: Myotis nesopolus 
specimen: mMyoNes1 
projects:  
  - vgp 
  - bat1k 
assembled_by_group: Rockefeller 
data_location: S3 
release_to: S3 
primary: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/assembly_vgp_HiC_2.0/mMyoNes1.HiC.hap1.2024223.fasta.gz 
haplotigs: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/assembly_vgp_HiC_2.0/mMyoNes1.HiC.hap2.20240223.fasta.gz 
pretext: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mMyoNes1_hap1_s2.pretext 
pretext: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mMyoNes1_hap2_s2.pretext 
kmer_spectra_img: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/assembly_vgp_HiC_2.0/evaluation/merqury/mMyoNes1_png/ 
pacbio_read_dir: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/genomic_data/pacbio_hifi/ 
pacbio_read_type: hifi 
hic_read_dir: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/genomic_data/arima/ 
mito: s3://genomeark/species/Myotis_nesopolus/mMyoNes1/assembly_MT_rockefeller/mMyoNes1.MT.2024223.fasta.gz 
pipeline:  
  - hifiasm (0.19.8+galaxy0) 
  - yahs (1.2a.2+galaxy1) 
notes: This was a Hifiasm-HiC assembly of mMyoNes1. This hap1 assembly and hap2 assembly underwent separate HiC scaffolding with YaHS. The HiC prep kit used was Swift-IDT. The HiC reaction was using Arima. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.