Nannobrachium achirus

lantern fish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fNanAch
  name: Nannobrachium achirus
  taxon_id: 473322
  common_name: lantern fish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fNanAch1
      biosample_id: SAMEA12815432
      sex:
  genome_size: 1956000000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fNanAch1 50.16 Gbp 25.64x 34.0 GiB
Arima fNanAch1 216.76 Gbp 110.82x 67.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.96 Gbp.
Last upload on 1 September 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fNanAch1 PacBio HiFi (.bam) 50.16 Gbp 25.64x 34.0 GiB
Arima 216.76 Gbp 110.82x 67.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.96 Gbp.
Last upload on 1 September 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 10 January 2024
fNanAch1.pri.cur.20240110.fasta.gz (459.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 3.01 Mbp 3 77.57 Mbp
20 126 2.25 Mbp 5 76.11 Mbp
30 223 1.75 Mbp 8 70.19 Mbp
40 350 1.38 Mbp 11 66.58 Mbp
50 509 1.10 Mbp 14 65.38 Mbp
60 723 0.77 Mbp 17 62.85 Mbp
70 1040 493.80 Kbp 20 60.60 Mbp
80 1677 170.69 Kbp 24 49.42 Mbp
90 0 0
100 0 0
0.848x 3070 1.66 Gbp 673 1.66 Gbp
NG based on genome size 1.96 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 10 January 2024
fNanAch1.alt.cur.20240110.fasta.gz (452.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 168 0.86 Mbp 157 0.89 Mbp
20 438 0.61 Mbp 418 0.64 Mbp
30 814 450.52 Kbp 783 461.92 Kbp
40 1310 345.16 Kbp 1269 352.12 Kbp
50 1981 248.18 Kbp 1926 253.05 Kbp
60 2942 170.41 Kbp 2869 172.83 Kbp
70 4413 101.73 Kbp 4322 102.78 Kbp
80 7670 31.58 Kbp 7562 31.62 Kbp
90 0 0
100 0 0
0.828x 10094 1.62 Gbp 9986 1.62 Gbp
NG based on genome size 1.96 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 November 2023
fNanAch1.MT.20231114.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.