Numenius arquata

Eurasian curlew

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bNumArq
  name: Numenius arquata
  taxon_id: 31919
  common_name: Eurasian curlew
  order:
    name: Charadriiformes
  family:
    name: Scolopacidae
  individuals:
    - short_name: bNumArq3
      biosample_id: SAMEA112693994
      sex:
  genome_size: 1320300000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bNumArq3 55.64 Gbp 42.14x 30.5 GiB
Arima bNumArq3 86.83 Gbp 65.77x 26.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.32 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bNumArq3 PacBio HiFi (.bam) 55.64 Gbp 42.14x 30.5 GiB
Arima 86.83 Gbp 65.77x 26.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.32 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 3 Primary Assembly
Version assembly_cambridge from 23 December 2023
bNumArq3.pri.asm.20231223.fasta.gz (364.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.16 Mbp 1 141.87 Mbp
20 31 6.62 Mbp 2 132.32 Mbp
30 55 4.67 Mbp 4 76.97 Mbp
40 89 3.40 Mbp 6 71.99 Mbp
50 132 2.76 Mbp 8 63.48 Mbp
60 187 2.09 Mbp 10 62.16 Mbp
70 262 1.49 Mbp 12 45.98 Mbp
80 374 0.90 Mbp 17 16.88 Mbp
90 624 257.03 Kbp 39 1.31 Mbp
100 0 0
0.961x 1748 1.27 Gbp 987 1.27 Gbp
NG based on genome size 1.32 Gbp.
Individual 3 Alternate Assembly
Version assembly_cambridge from 23 December 2023
bNumArq3.alt.asm.20231223.fasta.gz (333.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 78 1.30 Mbp 78 1.30 Mbp
20 203 0.91 Mbp 203 0.91 Mbp
30 366 0.73 Mbp 366 0.73 Mbp
40 571 0.57 Mbp 571 0.57 Mbp
50 842 424.43 Kbp 842 424.43 Kbp
60 1211 298.09 Kbp 1211 298.09 Kbp
70 1780 174.95 Kbp 1780 174.95 Kbp
80 2991 63.71 Kbp 2991 63.71 Kbp
90 7941 10.76 Kbp 7941 10.76 Kbp
100 0 0
0.904x 8544 1.19 Gbp 8544 1.19 Gbp
NG based on genome size 1.32 Gbp.
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 30 May 2024
bNumArq3.hap1.cur.20240530.fasta.gz (372.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 8.36 Mbp 1 141.98 Mbp
20 30 6.48 Mbp 2 133.18 Mbp
30 54 4.87 Mbp 4 77.45 Mbp
40 86 3.58 Mbp 6 71.65 Mbp
50 128 2.68 Mbp 8 63.36 Mbp
60 183 2.07 Mbp 10 62.19 Mbp
70 258 1.50 Mbp 12 45.74 Mbp
80 367 0.97 Mbp 16 19.07 Mbp
90 579 358.84 Kbp 27 6.47 Mbp
100 1498 56.19 Kbp 739 61.14 Kbp
1.022x 2604 1.35 Gbp 1819 1.35 Gbp
NG based on genome size 1.32 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 30 May 2024
bNumArq3.hap2.cur.20240530.fasta.gz (339.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.38 Mbp 1 141.74 Mbp
20 32 6.04 Mbp 2 133.07 Mbp
30 57 4.42 Mbp 4 76.79 Mbp
40 92 3.22 Mbp 6 70.29 Mbp
50 139 2.53 Mbp 8 63.00 Mbp
60 199 1.86 Mbp 10 56.36 Mbp
70 287 1.19 Mbp 14 19.17 Mbp
80 446 0.55 Mbp 25 7.59 Mbp
90 1120 50.85 Kbp 450 63.54 Kbp
100 0 0
0.908x 1504 1.20 Gbp 811 1.20 Gbp
NG based on genome size 1.32 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bNumArq3.MT.20240227.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.