Numenius arquata
Eurasian curlew
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bNumArq3 | 55.64 Gbp | 42.14x | 30.5 GiB | |
Arima | bNumArq3 | 86.83 Gbp | 65.77x | 26.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.32 Gbp.
Last upload on 8 February 2024.
Coverage based on genome size 1.32 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bNumArq3 | PacBio HiFi (.bam) | 55.64 Gbp | 42.14x | 30.5 GiB | |
Arima | 86.83 Gbp | 65.77x | 26.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.32 Gbp.
Last upload on 8 February 2024.
Coverage based on genome size 1.32 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 3 Primary Assembly
Version assembly_cambridge from 23 December 2023
bNumArq3.pri.asm.20231223.fasta.gz (364.9 MiB)
Quality: not computed
Version assembly_cambridge from 23 December 2023
bNumArq3.pri.asm.20231223.fasta.gz (364.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 13 | 8.16 Mbp | 1 | 141.87 Mbp |
20 | 31 | 6.62 Mbp | 2 | 132.32 Mbp |
30 | 55 | 4.67 Mbp | 4 | 76.97 Mbp |
40 | 89 | 3.40 Mbp | 6 | 71.99 Mbp |
50 | 132 | 2.76 Mbp | 8 | 63.48 Mbp |
60 | 187 | 2.09 Mbp | 10 | 62.16 Mbp |
70 | 262 | 1.49 Mbp | 12 | 45.98 Mbp |
80 | 374 | 0.90 Mbp | 17 | 16.88 Mbp |
90 | 624 | 257.03 Kbp | 39 | 1.31 Mbp |
100 | 0 | 0 | ||
0.961x | 1748 | 1.27 Gbp | 987 | 1.27 Gbp |
NG based on genome size 1.32 Gbp.
Individual 3 Alternate Assembly
Version assembly_cambridge from 23 December 2023
bNumArq3.alt.asm.20231223.fasta.gz (333.4 MiB)
Quality: not computed
Version assembly_cambridge from 23 December 2023
bNumArq3.alt.asm.20231223.fasta.gz (333.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 78 | 1.30 Mbp | 78 | 1.30 Mbp |
20 | 203 | 0.91 Mbp | 203 | 0.91 Mbp |
30 | 366 | 0.73 Mbp | 366 | 0.73 Mbp |
40 | 571 | 0.57 Mbp | 571 | 0.57 Mbp |
50 | 842 | 424.43 Kbp | 842 | 424.43 Kbp |
60 | 1211 | 298.09 Kbp | 1211 | 298.09 Kbp |
70 | 1780 | 174.95 Kbp | 1780 | 174.95 Kbp |
80 | 2991 | 63.71 Kbp | 2991 | 63.71 Kbp |
90 | 7941 | 10.76 Kbp | 7941 | 10.76 Kbp |
100 | 0 | 0 | ||
0.904x | 8544 | 1.19 Gbp | 8544 | 1.19 Gbp |
NG based on genome size 1.32 Gbp.
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 30 May 2024
bNumArq3.hap1.cur.20240530.fasta.gz (372.6 MiB)
Quality: not computed
Version assembly_curated from 30 May 2024
bNumArq3.hap1.cur.20240530.fasta.gz (372.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 8.36 Mbp | 1 | 141.98 Mbp |
20 | 30 | 6.48 Mbp | 2 | 133.18 Mbp |
30 | 54 | 4.87 Mbp | 4 | 77.45 Mbp |
40 | 86 | 3.58 Mbp | 6 | 71.65 Mbp |
50 | 128 | 2.68 Mbp | 8 | 63.36 Mbp |
60 | 183 | 2.07 Mbp | 10 | 62.19 Mbp |
70 | 258 | 1.50 Mbp | 12 | 45.74 Mbp |
80 | 367 | 0.97 Mbp | 16 | 19.07 Mbp |
90 | 579 | 358.84 Kbp | 27 | 6.47 Mbp |
100 | 1498 | 56.19 Kbp | 739 | 61.14 Kbp |
1.022x | 2604 | 1.35 Gbp | 1819 | 1.35 Gbp |
NG based on genome size 1.32 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 30 May 2024
bNumArq3.hap2.cur.20240530.fasta.gz (339.9 MiB)
Quality: not computed
Version assembly_curated from 30 May 2024
bNumArq3.hap2.cur.20240530.fasta.gz (339.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 13 | 8.38 Mbp | 1 | 141.74 Mbp |
20 | 32 | 6.04 Mbp | 2 | 133.07 Mbp |
30 | 57 | 4.42 Mbp | 4 | 76.79 Mbp |
40 | 92 | 3.22 Mbp | 6 | 70.29 Mbp |
50 | 139 | 2.53 Mbp | 8 | 63.00 Mbp |
60 | 199 | 1.86 Mbp | 10 | 56.36 Mbp |
70 | 287 | 1.19 Mbp | 14 | 19.17 Mbp |
80 | 446 | 0.55 Mbp | 25 | 7.59 Mbp |
90 | 1120 | 50.85 Kbp | 450 | 63.54 Kbp |
100 | 0 | 0 | ||
0.908x | 1504 | 1.20 Gbp | 811 | 1.20 Gbp |
NG based on genome size 1.32 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
bNumArq3.MT.20240227.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_cambridge from 27 February 2024
bNumArq3.MT.20240227.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.