Nyctalus leisleri

lesser noctule

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mNycLei
  name: Nyctalus leisleri
  taxon_id: 59465
  common_name: lesser noctule
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mNycLei1
      biosample_id: SAMEA114250308
      sex: male
  genome_size: 2288520000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mNycLei1 94.87 Gbp 41.46x 36.9 GiB
Arima mNycLei1 108.47 Gbp 47.40x 33.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 8 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mNycLei1 PacBio HiFi (.bam) 94.87 Gbp 41.46x 36.9 GiB
Arima 108.47 Gbp 47.40x 33.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.29 Gbp.
Last upload on 8 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 18 September 2024
mNycLei1.hap1.cur.20240918.fasta.gz (618.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 39 4.76 Mbp 2 203.84 Mbp
20 95 3.63 Mbp 3 200.95 Mbp
30 167 2.75 Mbp 4 111.20 Mbp
40 258 2.29 Mbp 6 101.58 Mbp
50 370 1.83 Mbp 9 87.05 Mbp
60 514 1.38 Mbp 11 79.18 Mbp
70 705 1.03 Mbp 15 57.96 Mbp
80 973 0.70 Mbp 19 43.91 Mbp
90 1433 338.19 Kbp 97 0.83 Mbp
100 0 0
0.976x 2943 2.23 Gbp 1281 2.23 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 18 September 2024
mNycLei1.hap2.cur.20240918.fasta.gz (563.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 44 4.25 Mbp 2 199.57 Mbp
20 104 3.38 Mbp 3 199.42 Mbp
30 182 2.65 Mbp 4 110.24 Mbp
40 280 2.05 Mbp 6 89.25 Mbp
50 407 1.62 Mbp 9 78.53 Mbp
60 579 1.13 Mbp 12 62.81 Mbp
70 821 0.78 Mbp 16 52.10 Mbp
80 1226 380.40 Kbp 50 1.36 Mbp
90 0 0
100 0 0
0.879x 2898 2.01 Gbp 1335 2.01 Gbp
NG based on genome size 2.29 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 6 August 2024
mNycLei1.MT.20240806.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.