Nycticebus coucang
slow loris
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mNycCou1: GCA_027406575.1 | mNycCou1: GCA_027406535.1 |
ENA | mNycCou1: GCA_027406575.1 | mNycCou1: GCA_027406535.1 |
UCSC Genome Browser | mNycCou1: GCA_027406575.1 | mNycCou1: GCA_027406535.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 David Haring/Duke Lemur Center (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 3.50 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 3.50 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 3.50 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 3.50 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 April 2022
mNycCou1.pri.cur.20220401.fasta.gz (845.5 MiB)
Quality: 0.1 errors/Mb (QV=68.35)
Version assembly_curated from 1 April 2022
mNycCou1.pri.cur.20220401.fasta.gz (845.5 MiB)
Quality: 0.1 errors/Mb (QV=68.35)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 82.19 Mbp | 1 | 187.33 Mbp |
20 | 8 | 74.33 Mbp | 3 | 161.20 Mbp |
30 | 13 | 56.61 Mbp | 6 | 138.33 Mbp |
40 | 21 | 41.58 Mbp | 8 | 136.59 Mbp |
50 | 30 | 31.79 Mbp | 11 | 128.24 Mbp |
60 | 43 | 23.37 Mbp | 14 | 99.99 Mbp |
70 | 62 | 13.64 Mbp | 18 | 80.58 Mbp |
80 | 116 | 2.76 Mbp | 23 | 38.95 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.832x | 302 | 2.91 Gbp | 84 | 2.92 Gbp |
NG based on genome size 3.50 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2022
mNycCou1.alt.cur.20220401.fasta.gz (782.3 MiB)
Quality: not computed
Version assembly_curated from 1 April 2022
mNycCou1.alt.cur.20220401.fasta.gz (782.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 39 | 6.86 Mbp | 39 | 6.86 Mbp |
20 | 109 | 3.88 Mbp | 109 | 3.88 Mbp |
30 | 229 | 2.32 Mbp | 229 | 2.32 Mbp |
40 | 426 | 1.37 Mbp | 426 | 1.37 Mbp |
50 | 762 | 0.81 Mbp | 762 | 0.81 Mbp |
60 | 1347 | 456.04 Kbp | 1347 | 456.04 Kbp |
70 | 2535 | 171.41 Kbp | 2535 | 171.41 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.769x | 6485 | 2.69 Gbp | 6485 | 2.69 Gbp |
NG based on genome size 3.50 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 15 June 2022
mNycCou1.MT.20220615.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 15 June 2022
mNycCou1.MT.20220615.fasta.gz (5.0 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.